Dath014215.1
Basic Information
- Insect
- Drosophila athabasca
- Gene Symbol
- retn
- Assembly
- GCA_008121215.1
- Location
- VMQQ01000020.1:3800794-3824383[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-26 7.3e-23 80.5 0.0 2 89 318 403 317 403 0.96 2 2 3.1 7.8e+03 -2.9 0.1 13 38 558 588 541 599 0.61
Sequence Information
- Coding Sequence
- ATGCAACTTCGCGTGCACCCTACTATGGACTGTAGCGGCCGTTCTAATAGCAATATTGAACGCGATTCCGATTTGGGAGACGATCTGTCACATGGTGATCGAACGGACGACGAGATGCGCGACTGTGACTCCGTGGATGGAGAGCATCATCAGCTGAGCGCCAAGGCGGCGATTGCGGCCAGACTCAGTCACACAGCGTCcggtggcggaggcggaggtcACAACTTTGCCAGTCCCGATCAGCAGACAGAACTGCCACTAAGCCATCACCATCAGCTGCCGCCAAATCATCCGCTTAACGCGCTGGGCAGCTTCATGGGCATCGGGGGACTACACAGCATTCCAAATCTGCAGCACAGCGACGTCCTGGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGACTAATGGAACAGGACTATGCGGCCGCTGCCCATGCGGCAGCCTTCGGGGCCAATATGCTGCCCACGACGATTAGCTCGGGCTTTACCCTGCCACACAATtcggtggcagcggcagcggccgcAGCCTCCTTTGGCCATGTGGCCTCGGCGCCCACTTCCAGCAATGGCGGCAGCTACAATGGGGGTGTcatgggaggaggaggaggcggcaaCACCACCACACCAAGTTCGGGCAACAATCCAGCCACCAATGGAGGCAGCCACGCCAACGTttccaacaataacaacaacaacagtagcggcggaggaggcggaggtggagcaggaccaggcggaggcggaggacaTCCCTTCTCGTTTGCATCGCCCACAGCAGTGGCAGGCGGTGGCGGCAAAGAAGCCCGCCACTTTGCAGCTAATTCCGCATCGAACTCATCGACGTCCAGCGAGGCATCGAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGACGATCCCAAGCGCAAGGAGTTCCTCGATGATCTGTTCTCGTTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATTATGGCCAAGTCCGTGCTGGATCTCTACGAGCTGTACAATCTGGTGATTGCGCGCGGCGGCCTCGTCGATGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCGTCGAGCATCACCAGTGCAGCGTTCACCCTGCGGACCCAATACATGAAGTATCTGTACCCGTACGAGTGCGAGAAGAAGAACCTGAGCACACCGGCCGAGCTGCAGGCGGCCATCGATGGCAATCGGCGGGAAGGACGCCGCTCTAGCTACGGCCAGTACGAGGCCATGCACAACCAGATGCCCCTGACGCCCATTTCGCGTCCCTCCCTCCCGGGTGGCATGCAGCAGATGTCGCCGCTGGCATTGGTCACCCATGCGGCGGTGGCCAACAATCAGCAGGCCcaggcagcagccgccgccgcggCCGCACATCATCGACTGATGGGTGCTCCAGGATTCGGCCAGATGCCCAATCTCGTCAAGCAGGAGATCGAGAGTCGCATGATGGAGTATCTGCAGCTAATTCAGGCCAAGAAGGAGCAGGGCATGGCTCCAGTCCTGGGCGCCACACAtccccaccagcagcaccaacaccaacaccagcagcagcagcagccgccgccacagcaacaacagcagcaacatctcctccagcagcagcagcggcagcgatcACAGAGTCCGGACATCAGCAAGCACGATGCGCTCAGCGCACAGGTGGCACTGTGGCACATgtaccacaacaacaacagtccACCGGGATCGGCACACACCTCCCCCCAGCAACGCGAAGCCTTGAACCTCTCCGACTCTCCACCGAATCTCACGAACATCAAAAGAGAACGCGAACGGGAGCCCACTCCAGAGCCCGTGGAGCAGGACGACGGACCGCTCCACCCACCGCCGGCCAAACGAGGGGGCAGTAGCCTCCTGCCACCCGGTTTCCCCGCCAATTTCTATCTGAATCCACACAACATGGCTGCcgtagcagcggcagcgggcTTCCATCACCAGGCGAACAGCGGCCACGGAGgacaccagcaccagcaggacGCTGCCTCCGAGGGGGAGCCCGAGGACGAGTACGGTCATGCAGAGCACAACACCACTGGCAACTCTTCGTCCATGCACGACGACGGCGAGGCCCAGCAGATGAACGGacaccaccatcaccaccaccagagCCATCAGCTGGACAAGTCGGATGACTCGGCCATCGAGAACTCGCCCAGCACAtccaccaccaccgcctcGGTAGGGCATCGCCACAGTTCGCCGGTGTCCACCAAGAAGAAGAGCGGCAAGGCCGCTCAGGCCAGTGCCAAGGATCTGCCGGAGGAGAAGTCTGGCGGTAACTCTAAAATGAATCCACTAGACACGTTGAGCCTACTCTCCGGAATGCAGTTCCAGGTGGCCAGGAATGGAACTGGCGAGAACGGAGAGCAACAGCTCATTGTCAATCTCGAGCTGAATGGCATCAAGTACTCGGGTGTCCTGGTGGCGAATGCCCCAATTACACAGACAGAGGCCGGAAGAACGGGATCGCCATGCCCCGAGCCAGCGGGtgatgacgaggaggaggacgaagaggaggaggctTCGCATGCCGTGGACGAGGAggctcaacaacaacaacaacgttCACCAATAAAAGAAGAAGCCAACGAGGAGACAGACCAGGACATGGACaccagtgctgctgctgccattgtgAATGGTGGCGGGGGGACAGTGGGAGCAGGAGTGGGTGCTGCTGGTGTGGGTATCCCGCTGCTCAAGGATGCGGTGCTCAGTTCGTAG
- Protein Sequence
- MQLRVHPTMDCSGRSNSNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTASGGGGGGHNFASPDQQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSGFTLPHNSVAAAAAAASFGHVASAPTSSNGGSYNGGVMGGGGGGNTTTPSSGNNPATNGGSHANVSNNNNNNSSGGGGGGGAGPGGGGGHPFSFASPTAVAGGGGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPGFGQMPNLVKQEIESRMMEYLQLIQAKKEQGMAPVLGATHPHQQHQHQHQQQQQPPPQQQQQQHLLQQQQRQRSQSPDISKHDALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVEQDDGPLHPPPAKRGGSSLLPPGFPANFYLNPHNMAAVAAAAGFHHQANSGHGGHQHQQDAASEGEPEDEYGHAEHNTTGNSSSMHDDGEAQQMNGHHHHHHQSHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKSGKAAQASAKDLPEEKSGGNSKMNPLDTLSLLSGMQFQVARNGTGENGEQQLIVNLELNGIKYSGVLVANAPITQTEAGRTGSPCPEPAGDDEEEDEEEEASHAVDEEAQQQQQRSPIKEEANEETDQDMDTSAAAAIVNGGGGTVGAGVGAAGVGIPLLKDAVLSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00603134;
- 90% Identity
- iTF_00563679;
- 80% Identity
- -