Dgla002335.1
Basic Information
- Insect
- Drosophila glabriapex
- Gene Symbol
- sba
- Assembly
- GCA_035042305.1
- Location
- JAWNLN010000018.1:3488801-3496222[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.45 2.8e+02 1.1 0.2 32 60 137 166 118 191 0.82 2 2 2.5e-08 1.6e-05 24.3 0.0 10 58 255 294 247 315 0.82
Sequence Information
- Coding Sequence
- ATGGCTGCCGCATCCGCTggccaacagctgcagcagcagcagcagcaacaacagccgcagcatAAATTGAacattgttggtgttggcaaTGCGGAGACGGTTGCTGGCGTGCTGCAGGTCAACAAtgagttgcaacagcaacagcaacagctcaacatgtacaagcagcagcagcaacagcaattgttgcagcaacagcaattctATCAGCAGCAAACGAAATTTGTATCGCGGGTCGTTACAAATGCAGCCGCaatgcaaccacaacaacaacaacagcagcaacaaatattacCAGCTGGTTTGGTAAATGGCAGCGCCAACATGATGCAAGCCACAAATGTTGCtgtacagcagcagcaccaacaacagcagcagcaacaacaacaacaacaactgcggcacagtcaacacatttttgtgtgtccAGCAATAGGCAcgcagctacagcagcaacaacagcagcagcagcaactccaacagcaacagcagcagcagcaacttcaacagcagcagcagcagcaaactaaACAGCGTTTAGCGCAAATCAAGTTGCCTGTAAagtccgcagcagcagcagccgcagcggcagcagtcgcaacagcaactgttgctgccacgCACTGTatgccagcaacaattgcaacgcGTCAAATGAATCAGaaccatcagcaacagcagctctaTGCTAAgaatttggccaaaaacaataatgctggcaacaacatcaacatcaacaacagcaacagcaataacaatgcaaATTTGGCTCCAGGCTGGCGTCGactaaccaacaacaatgaagtGGCCTACATCAGTCCGACGGGCAAAACGCTGCGCACACAATTCCAAATTAAGGACTATTTGCTAACACAGGGTACCTGCAAGTGCGGCCTGCCGTGTCCGCTGAGGCCGGAATactttttcgattttaatgCACAGGTAAGTTAG
- Protein Sequence
- MAAASAGQQLQQQQQQQQPQHKLNIVGVGNAETVAGVLQVNNELQQQQQQLNMYKQQQQQQLLQQQQFYQQQTKFVSRVVTNAAAMQPQQQQQQQQILPAGLVNGSANMMQATNVAVQQQHQQQQQQQQQQQLRHSQHIFVCPAIGTQLQQQQQQQQQLQQQQQQQQLQQQQQQQTKQRLAQIKLPVKSAAAAAAAAAVATATVAATHCMPATIATRQMNQNHQQQQLYAKNLAKNNNAGNNININNSNSNNNANLAPGWRRLTNNNEVAYISPTGKTLRTQFQIKDYLLTQGTCKCGLPCPLRPEYFFDFNAQVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516986; iTF_00566788; iTF_00497382; iTF_00496595; iTF_00528044; iTF_00609880; iTF_00560267; iTF_01326393; iTF_00522171; iTF_00616193; iTF_00548802; iTF_00558658; iTF_00577058; iTF_00525124; iTF_00518437; iTF_00521349; iTF_00595941; iTF_00564647; iTF_00501801; iTF_00511273; iTF_00593097; iTF_00535309; iTF_00597357; iTF_00552305; iTF_00500306; iTF_00482229; iTF_00570391; iTF_00576343; iTF_00619836; iTF_00495109; iTF_00574045; iTF_00499582; iTF_00485856;
- 90% Identity
- iTF_00518437;
- 80% Identity
- -