Dfun008070.1
Basic Information
- Insect
- Drosophila fungiperda
- Gene Symbol
- sba
- Assembly
- GCA_035042345.1
- Location
- JAWNLM010000165.1:690111-697111[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4 2.9e+03 -2.1 0.0 34 62 144 173 136 188 0.61 2 3 2.8 5.9e+03 -3.1 0.0 34 50 198 214 189 215 0.77 3 3 6.5e-09 1.4e-05 24.6 0.0 10 58 250 289 242 310 0.82
Sequence Information
- Coding Sequence
- ATGGCTGCCGCATCCGCTGgccaacagctgcagcagcaacagcagcagcagcaacaacagacgcAGCACAAATTGAAcattgttggtgttggcaATGCGGAGACGGTTGCTGGTGTGCTGCAGGTCAACAAtgagttgcaacagcaacagcaacagctcaaCATgtacaagcaacagcagcaacagcaattgttgcagcaacagcagcagcaattctaTCAGCAGCAAACGAAATTTGTATCGCGGGTCGTTACAAATGCAGCCGCAATGCaatcccaacaacaacaacaacagcagcaacaaatattacCAGCTGGTTTGGTAAATGGCAGCGCCAACGTGATGCAAGCCACAAATGTtgctgtgcagcagcagcaacaacaacaacaacagcagcaacaaccacaacaactgcGGCACAGTcaacacatttttgtgtgtccATCAATAGGAAcacagctacagcaacagcaacaacaacagcagcagcaacttcaacagcagcagcaaaccaaACAGCGTTTAGCGCAAATAAAGTTGCCCGTAAAGTccgcagcaggagcaacagtcgcaacagcaactgttgctacCACGCACTGTGCgccagcaacaattgcaatgcgCCAAATAAATCAGATCCATCAGCCACAGCAGCTCTATGCGAAGAATGTGGTCAAAAACAATAATGCtggcaacaacataaacatcaacaatagcatcaacaacagcaacagcaataacaatgcaaatttgGCTCCAGGCTGGCGTCGactaaccaacaacaatgaagTGGCCTACATCAGTCCGACGGGCAAAACGCTGCGTacacaattgcaaataaaGGACTATTTGCTAACACAGGGTACCTGCAAGTGCGGCCTGCCATGTCCGCTGAGGCCGGAATactttttcgattttaatgcACAGGTAAGTTAG
- Protein Sequence
- MAAASAGQQLQQQQQQQQQQTQHKLNIVGVGNAETVAGVLQVNNELQQQQQQLNMYKQQQQQQLLQQQQQQFYQQQTKFVSRVVTNAAAMQSQQQQQQQQQILPAGLVNGSANVMQATNVAVQQQQQQQQQQQQPQQLRHSQHIFVCPSIGTQLQQQQQQQQQQLQQQQQTKQRLAQIKLPVKSAAGATVATATVATTHCAPATIAMRQINQIHQPQQLYAKNVVKNNNAGNNININNSINNSNSNNNANLAPGWRRLTNNNEVAYISPTGKTLRTQLQIKDYLLTQGTCKCGLPCPLRPEYFFDFNAQVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00513461;
- 90% Identity
- iTF_00552305; iTF_00500306; iTF_00535309;
- 80% Identity
- -