Dneu005028.1
Basic Information
- Insect
- Drosophila neutralis
- Gene Symbol
- sba
- Assembly
- GCA_035044385.1
- Location
- JAWNME010000219.1:3821157-3828451[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.9 1.9e+03 -1.4 0.1 29 49 146 167 131 193 0.70 2 2 7.4e-09 1.6e-05 24.5 0.0 9 58 252 292 244 313 0.81
Sequence Information
- Coding Sequence
- ATGGCTGCCGCATCCGCtggccaacagctgcagcagcagcagcagcaacaacagactcAGCACAAATTGAacattgttggtgttggcaaTGCGGAGACGGTTGCTGGTGTGCTGCAGGTCAACAAtgagttgcaacagcaacagcaacagctcaacatgtacaagcaacagcagcaacagcaattgttgcagcaacagcaacatcaattcTATCAGCAGCAAACGAAATTTGTATCGCGGGTCGTTACAAATGCAGCCGCaatgcaaccacaacaacaacaacaacagcagcagcaacaaatattacCAGCTGGTTTGGTAAATGGCAGCGCCAACATGATGCAAGCCACAAATGTTGCtgtacagcagcagcagcaccaacaacagcagcaacaacaacagcaacaacaacagcagcagcaacaacaacaactgcgtcAAAGTCaacacatttttgtgtgtcCATCAATAGGCAcgcagctacagcaacagcaacaacagcagcagcagcaacttcaacagcagcagcagcaaagcaaacagcGTTTAGCGCAAATCAAGTTGCCTGTAAagtccgcagcagcagcagcagtcgcaacagcaactgttgctgccgcgCACTGTatgccagcaacaattgcaatgcGTCAAATGAATCAGaaccatcagcaacagcagctctaTGCTAAGAATGtggccaaaaacaataatggtggcaacaacatcaacatcaacagcaacagcaacaacaatgcaaatttgGCTCCAGGCTGGCGTCGactaaccaacaacaatgaagtGGCCTACATCAGTCCAACGGGCAAAACGCTGCGTACACAATTCCAAATTAAGGACTATTTGCTAACACAGGGTACCTGCAAGTGCGGCCTGCCGTGTCCGCTGAGGCCGGAATactttttcgattttaatgCACAGGTAAGTTAG
- Protein Sequence
- MAAASAGQQLQQQQQQQQTQHKLNIVGVGNAETVAGVLQVNNELQQQQQQLNMYKQQQQQQLLQQQQHQFYQQQTKFVSRVVTNAAAMQPQQQQQQQQQQILPAGLVNGSANMMQATNVAVQQQQHQQQQQQQQQQQQQQQQQQLRQSQHIFVCPSIGTQLQQQQQQQQQQLQQQQQQSKQRLAQIKLPVKSAAAAAVATATVAAAHCMPATIAMRQMNQNHQQQQLYAKNVAKNNNGGNNININSNSNNNANLAPGWRRLTNNNEVAYISPTGKTLRTQFQIKDYLLTQGTCKCGLPCPLRPEYFFDFNAQVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00513461;
- 90% Identity
- iTF_00528044;
- 80% Identity
- -