Spol015526.1
Basic Information
- Insect
- Scaptomyza polygonia
- Gene Symbol
- sba
- Assembly
- GCA_035044585.1
- Location
- JAWNNU010001659.1:831045-842033[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.67 2.1e+03 -1.0 0.1 34 67 151 185 135 192 0.71 2 2 1.6e-08 4.8e-05 23.5 0.0 11 60 258 298 250 321 0.75
Sequence Information
- Coding Sequence
- ATGGCAGCCGCATCTGCTGGccaacagctgcaacagcagcaacagcagcaacaacagcagcagcagccgcaccaccaccatcaccaccagcaccaccaCAAATTGAATATTGTTAGTGTTGGCAATGCGGATACAGTTGCTGGGGTGCTGCAGGTGAATgagttgcaacagcaacagctcaACATGtacaagcaacagcagcagcaaatgttgcagcaacaacagcagcaatgctatcagcagcaaacaaaatttgtatCGCGGGTCGTTACAAATGCAGCCGCAATgcaaccacaacagcaacagcagcaacaaatattaCCAGCTGGCTTGGTAAATGGCAGCGCCAACATGATGCAAGCCACAAACAACGCTCTACAGctacaacatcaacaacatcagcagcagcagcaacaacaccaacaacaacaattgagaCATAGTCAAcacatttttgtgtgtccaGCTATAGGCACgcagctacaacagcagcaacagcaactacaacagcaacttcaacaacagcagcaaacaaaacagcgTTTAGCGCAAATTAAGTTGCCTGTAAAGACCGCAGGAGCGGCAGGAGCAGCAGTAGCTACGACAGCAACTGTTACTGCCACAAACTGTATGCAAGCAACAATTGGAACGCGTCAAATGAATcaaagccagcagcagcagcagcagcagctcttTGCTAAGaatttggccaaaaacaataatgctggcaacatcaacatcaacagcaacagcatcaacaacaatgcaaattTGGCCCCAGGCTGGCGTCGactaaccaacaacaatgaagTGGCCTACATCAGTCCAACAGGCAAAACGTTGCACACACAATTTCAAATAAAGGACTATTTGCTAACACAGGGTACCTGCAAGTGCGGCCTGCCATGTCCATTGAGGCCGGAAcacttttttgattttaatgcaCAGGAAGCGTTGGCAAGGCATGGCATGGCATGGCAAGGCAAGGCACGCAGTAAACGCAACGATGGCTCCGGCAACATGACTGAGCGATTACTCAGATCCGGCAGTGCCGCAAGTTCCTGTCGCGAGTGCGCTCAATTGCCGCCAGGCAAATACTAA
- Protein Sequence
- MAAASAGQQLQQQQQQQQQQQQPHHHHHHQHHHKLNIVSVGNADTVAGVLQVNELQQQQLNMYKQQQQQMLQQQQQQCYQQQTKFVSRVVTNAAAMQPQQQQQQQILPAGLVNGSANMMQATNNALQLQHQQHQQQQQQHQQQQLRHSQHIFVCPAIGTQLQQQQQQLQQQLQQQQQTKQRLAQIKLPVKTAGAAGAAVATTATVTATNCMQATIGTRQMNQSQQQQQQQLFAKNLAKNNNAGNININSNSINNNANLAPGWRRLTNNNEVAYISPTGKTLHTQFQIKDYLLTQGTCKCGLPCPLRPEHFFDFNAQEALARHGMAWQGKARSKRNDGSGNMTERLLRSGSAASSCRECAQLPPGKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00513461;
- 90% Identity
- -
- 80% Identity
- -