Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387675.1:34053067-34068136[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 6.4e-06 0.0004 21.3 0.2 1 23 174 196 174 196 0.99

2 27 0.00068 0.042 14.9 0.8 2 21 231 250 230 251 0.92

3 27 1.2e-05 0.00072 20.5 0.8 3 23 289 310 287 310 0.96

4 27 0.00024 0.015 16.3 0.5 1 23 361 384 361 384 0.95

5 27 0.6 37 5.6 0.2 1 23 408 430 408 430 0.96

6 27 4e-05 0.0025 18.8 3.2 2 23 499 520 498 520 0.97

7 27 0.0021 0.13 13.3 4.1 2 23 572 594 571 594 0.97

8 27 0.0012 0.074 14.1 1.0 1 23 644 667 644 667 0.97

9 27 0.0058 0.36 12.0 0.2 1 23 723 745 723 745 0.97

10 27 0.02 1.2 10.3 6.1 2 23 757 778 756 778 0.96

11 27 0.049 3 9.0 1.8 2 23 790 811 789 811 0.96

12 27 0.0045 0.28 12.3 1.0 1 23 821 843 821 843 0.98

13 27 0.01 0.64 11.2 7.2 1 23 871 893 871 893 0.97

14 27 0.0094 0.58 11.3 4.3 1 23 904 926 904 926 0.98

15 27 1.4e-05 0.0009 20.2 0.8 1 23 934 956 934 956 0.97

16 27 0.00077 0.048 14.7 0.1 2 23 976 998 975 998 0.97

17 27 0.012 0.76 10.9 3.1 1 23 1018 1040 1018 1040 0.96

18 27 0.13 8.2 7.7 3.3 1 23 1047 1069 1047 1069 0.97

19 27 0.00067 0.042 14.9 2.4 1 23 1079 1102 1079 1102 0.96

20 27 0.0043 0.27 12.4 0.3 1 23 1124 1146 1124 1146 0.97

21 27 0.013 0.79 10.9 0.1 2 23 1227 1248 1226 1248 0.94

22 27 1.8 1.1e+02 4.1 4.5 5 23 1258 1276 1255 1276 0.94

23 27 0.019 1.2 10.4 0.8 2 23 1287 1309 1286 1309 0.95

24 27 0.059 3.7 8.8 1.8 2 23 1326 1344 1326 1344 0.89

25 27 0.035 2.1 9.5 1.4 2 21 1348 1367 1348 1368 0.94

26 27 1.5 90 4.4 2.6 2 23 1417 1438 1416 1438 0.93

27 27 0.001 0.065 14.3 0.3 2 23 1449 1471 1448 1471 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	6.4e-06	0.0004	21.3	0.2	1	23	174	196	174	196	0.99
2	27	0.00068	0.042	14.9	0.8	2	21	231	250	230	251	0.92
3	27	1.2e-05	0.00072	20.5	0.8	3	23	289	310	287	310	0.96
4	27	0.00024	0.015	16.3	0.5	1	23	361	384	361	384	0.95
5	27	0.6	37	5.6	0.2	1	23	408	430	408	430	0.96
6	27	4e-05	0.0025	18.8	3.2	2	23	499	520	498	520	0.97
7	27	0.0021	0.13	13.3	4.1	2	23	572	594	571	594	0.97
8	27	0.0012	0.074	14.1	1.0	1	23	644	667	644	667	0.97
9	27	0.0058	0.36	12.0	0.2	1	23	723	745	723	745	0.97
10	27	0.02	1.2	10.3	6.1	2	23	757	778	756	778	0.96
11	27	0.049	3	9.0	1.8	2	23	790	811	789	811	0.96
12	27	0.0045	0.28	12.3	1.0	1	23	821	843	821	843	0.98
13	27	0.01	0.64	11.2	7.2	1	23	871	893	871	893	0.97
14	27	0.0094	0.58	11.3	4.3	1	23	904	926	904	926	0.98
15	27	1.4e-05	0.0009	20.2	0.8	1	23	934	956	934	956	0.97
16	27	0.00077	0.048	14.7	0.1	2	23	976	998	975	998	0.97
17	27	0.012	0.76	10.9	3.1	1	23	1018	1040	1018	1040	0.96
18	27	0.13	8.2	7.7	3.3	1	23	1047	1069	1047	1069	0.97
19	27	0.00067	0.042	14.9	2.4	1	23	1079	1102	1079	1102	0.96
20	27	0.0043	0.27	12.4	0.3	1	23	1124	1146	1124	1146	0.97
21	27	0.013	0.79	10.9	0.1	2	23	1227	1248	1226	1248	0.94
22	27	1.8	1.1e+02	4.1	4.5	5	23	1258	1276	1255	1276	0.94
23	27	0.019	1.2	10.4	0.8	2	23	1287	1309	1286	1309	0.95
24	27	0.059	3.7	8.8	1.8	2	23	1326	1344	1326	1344	0.89
25	27	0.035	2.1	9.5	1.4	2	21	1348	1367	1348	1368	0.94
26	27	1.5	90	4.4	2.6	2	23	1417	1438	1416	1438	0.93
27	27	0.001	0.065	14.3	0.3	2	23	1449	1471	1448	1471	0.95

Sequence Information

Coding Sequence: ATGGTCACTCAGGATTTAGTGTACGCCCACACCGTAAATATATTTGAAGGAGATGGATTACCAGATAAAGTCTGTGCCGAATGCATCCAGAAACTCAGTAGTGCATATATTTTTAAACAACAGTGTGAAAGAGCTGATCAGGAGTTACGCCGAAATTATGTACCTCCTCCGGGTTCGAGTTCCACGCCGGTGCCAACCAACAGGACCAGTGGTGATTCCGTTTCCTCCGTCCACACTGAGGCGACCAATCAAACAAAACCGTCGCAAGCCTCTGAGCTAGACTCTACTAAAAGAAATACTCGGAAACGTAGTCATGAAAGTCTGGAAATTGCTTCTGCCAGTAGCAAATCGACCGAATTTCGACCCAGCAATTCAAAACGCGTCGACGAACTAAAAAGTAGTAACAAGCGGCCTAGGCTAACGGCTAGCAGTTATTATATGGATTCAGATTACGAAGACAACAGCGCTTCTCAATTCTCAGGCGAGACGGACTCTGACGAACCCCTACTGAGAGACGAATTCAAGTGTAAAGTTTGCGGTCGACAGTTTCCCTCGGCGAAGAGCTTAGCCGCGCACACCAGGATTCATTCAAGCAAAACGAGCAAGGCAAAAGATACCTTTCCTGAAAATGTACTAGTTACTATTCCAAAGAAGAATATCCAGGATGCGACTGATGTAGAAGACAATATTAGCTGCGATCAATGCGGAAAGAGCTTCAAATTAAAAATAATGCTGAAACGTCACCACGAGACGTGCGGAAAGTCACCGCAAAAGAGTCCACCCAAGACACCGGCCAAGCCCATCCAGAAAGAGTTATTAATATCGCTGGAACCCATAGACGGTATTCACCCGAACAGAATAAATTGTAGTATGTGTACAACTACATTCAAAACTACCGAGAACCTGGAGAAGCACATGAGGGTGGTGCATGCGGCCGTGTTGCCACAAGTTAAAGCGGAGCCCGAGGCGAGCAACGGGAAGGTCTCCGTGCCTTGTATTTACTGTAAAAAACCATTTGACGACTACTATGTACACAGTGAACATTTCAGTAAATGCCCAGAGAGTACTAATGCTACTACATTTTCGTGCCCCGTTTGCGAAAAGGTTACATCAAAAAAGTCAGCATACTTCAAACACATTAAGGACATTCACTTCGAGCCGCGGATGTGGGCGCTGAAGCCGGACCAGCAGGCGCAGGAGCAGGCGGCGCCGCAGGAGCTATTCCAGTGCCGCATGTGCTACAAGCAGCTGGGCACGGAGCAGCTGCTCATCACGCACCTGGCCGCGCACGTGTCCAACATCGAGGAGACCGGCGACGAGTCCAGGTACGTCGCATCCACTCGCCCTCACCCCTCCCCGCCCCACCCCACCCGCAACACCACACCACACCACACCACACCACACCAAACTGCCAGTAGGGTAGGGCCGAGCACAATAGAAGATTCGTCATCAATAGTGTCTGACAACAGCGGCGGCGGCCCGGGCGGCCCCCAGAAGTGTAAATACTGCGACAAAAGTTTCAAGTATAAGAAATCGTTAGTGAACCACGAGATGAAACATTTTCAACTTGAAAAAACAGAGCAAAGCCAGAAGCAAGAAAAGTGTATGAACGAAGACACAGAAATAGAGGCAGGAGCTAACGCTTCGACCAGCCTAGTGGACGAGTGTTACCGCGAGGAGTCCGAGTCCAGCCAGGAGGAAGGCGACGACAAGACGTGCGACATATGCGAGAAGCAGTTCTCTTACCGGCGCCTGCTCGTGCACCACAAGCGCACCAAGCACAATATGAGCTCCGGCACCAAGCGCTCCAGCGTCGTGCTCAAGCACTGCCTGGTGCGCTGTCTCATCTGCGACCTAGAGATGAGCGTGGCCGCGCTCAACGACCACAACAAGAAACACATCCAGCAGAACATGAAGCCGCGCAACCTCTACACCTGCTCCGACTGCGGCGACAAGTTCAAGAGCTGCAACGCTCTGGCAAACCACATCAAGCTGGTGCACAGGCTGAAGAGACTGCCGCCCAAGCAGTTTGAAGGCGCCGACTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCGCTGGACGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGAGGAACAGGGAGGCGAACCGTTGGTCAATCTTAGCGGATTTAACTGTACTATCTGCGGAAAGAACATGCCCACACTCATTTCTCTGAAGCGACATGTAAATTGGCATTCAAATGTTGGGAAGAACTTGGAAAAAAAGCTAGAATGCTTTGTTTGCAAAGAGACTTTCCGATTTCAATGCCACTACAAACTACATATGCGCGAGCACTATCGTGACACCAACCTGGATCCCGCACTGCTCACTTGCACCATCTGCAATCGGAAAAGCAAACACTTGAGGGCGGCCCAGGCGCATATGAACTATCACAAACAAACACGGTTTAAGAATAAAGACTACCAGTGTTCCATATGCAAACGCGTCTTTCAGTACCGGAAGGTGTATCTTTCACACATGGCTATACACTACAAGCGCGGTGAAAGCCAGAACACGATAGTAGGTGATTTACTACCCACGACTGCAGATAAAGCCGTTTTTGATGGCACCCATACTTGCCTTCATTGTGGTAAAGTGTGTGATTCTGAGAATTCTTTGAAACATCACATGTCTTGGCACAAATCGAAGACTTTGCTTTTTGGTGCGCGTCACGAATGCCCAATTTGCCACATCATGTTCACTAATAAAAAAAGGCAGGAACTACATACGCGGACACATTACGAAGACGATAACGGTCCATTTAAATGTACAATATGCGGCAAAGGTTACACAGATGAAGATTATTTCCGCAGGCACGTGAAAGGTCACAACTTTGATCACCAGTCTCACAAGGATAGGATAGCCCGACTTCGAAAGGACAAGGTGAAGTGTCCTATCTGCGTGCGCTACTATCCCGACTGGGTGAAGCTGATCCGGCACCTGCGGCGCACGCACCCCGAGAGCAAGATGGTGAAGCAGGACCCGGACGCGCCCGCGTCCGCGCCGCGCGTCTTCTCCTGCAAGCTGTGCGCCAAGAGCTTCCGCGACGAGCGTCGCCTGCGCCACCACGAGGAATCGCATCTGCGCAAGCCCGAGTTCTTCAAGTGTAAGTTCTGCGGCAAGAAAACTATTTCGCTCAAGAATCATAATGTGCACATTAAAGGACATCTCACTTCCAAACAAGTCGACAATCCATTTAAATGCCCTCAGTGCGATGAAACATTCATTAAAGGATACGATTTGCACCACCATTTGAGAGATGTGCACGACATTAATGAAACGTGGATTGCCGATCGCAACGAGCAAACGCTAAACGGGCCATTGAAAGAATTTCAATGCTCGATATGCCTCAAAATACTCGCAAGTAAGGGTAACTATGAGAGGCACTTGGATTACCATAATTCACTGAGATGCAACTACTGCTATGACTATTTTAGTTCGCTGAGGTTCCTGGAAGGACACTTGACTTTTAGTTGTGACAAAAAGAAGTTGATTGGTGACACTGAAATATATTCGAGGAAAATTAAATGTTACGTCTGTTACAAACCCTTCCATTTACAAGTGAAACTGGATTGCCATTTGCGCACACAGCACGGTATAAAAGTGTCTAAGGAGGCTTCAAAGAGCAAAAAAGATCTTGTTTGTGATTATTGCTTCAGAGTATTCGAAAACCTTGATGCTTTGACTGGACATAAAATTTATCATCGTACGATTGGTTATTACGGATGCATATATTGCAAACGAAAATTCAACACTTTGACTCTTTACAGAAAACATAAGAACCACCACTTCGCTCAGCTAAATGTCGATAACCCCACCAAATGCGAACACTGCGACGAGACTTTCGTCGCGTTTCGAGAAATGATTTACCACATGAGAGACGTGCACGGAGATGACAAGGAGTGGATCATAATGCCAAAGGAATCCATCGAGGAAACGTGCCCCATCTGCGGTAAGGTGTTCTTCAACTTGCACCGGCACCTCGACTACCACGAGGCGAACCGCTGCAAGAAGTGCGGCGAGTACTTCTACTCGCGCACCGACTTAGACAACCACCTGTGCGCCATTGAGAGCGACGACGAGGCGGCGGCGGGCGTGGACCTGGACGTGCGCCCCAAGTACGAGGAGTGCCGCTTCTGCTTCAAGCCCATCACCCGAAAGACCTCCAAGGCGAAGCACGACGTTATACACAAGGGTTCTGGCTCTATTTCCTGTAGGTTCTGTTCACATAAATTTAAAACGATGGACGCCTTCAACATTCATGCGTTTTCTCATCGCAACCGCAAATACAGAAAAAATCCATTGAAATGTCGTAAATGTGGAGAGAAATTTATTCAATATGGACCCTTCATAAAGCACATGAGAGGGGTGCATAAGTTCGTACAAAAAATGCACTACCGGGCGACAGTGAAAGCGGAACCGTGCGTGGTGTGCGGAGACGAGTTCCCCAACCTGCACAATCACTACCGTGCGCATTTGCAGAACCAGTGCACTTCGTGCCTCAAGTATTTCACATCCGCCAAAGTGTTCGCCGAACACGAGTGCGGTAAGGAGGACTCCGATCCTACCAAAGTGTTTACGTGTGACGCGAACTTGCCGCTCCTGATAAACACCTATGTTCCAAAGGACGTACAGGACGAACAAAAATATTACGGTTACGGTGACGAGGAGGAAGAGGAAGATAGCGGGGTGCGGCTGCAGGGCCACATTATGGACGAGGAAAGTCAGAATTGGAACGAGAATGAACACTTCCGGTTGCAGTGTCCCATCATATCGGACGTGCTGTCACTGTACCAGACGCAGGCCGAAGCGCAGGCGCAGGCGCCGGCCCCCGACCCCGACGTGATCGACCTGTCCGACGACGAGGTGGGCGTCGTCGACGACCAAGCCACGTGTCCCATCATTACCATTGACGATTAA
Protein Sequence: MVTQDLVYAHTVNIFEGDGLPDKVCAECIQKLSSAYIFKQQCERADQELRRNYVPPPGSSSTPVPTNRTSGDSVSSVHTEATNQTKPSQASELDSTKRNTRKRSHESLEIASASSKSTEFRPSNSKRVDELKSSNKRPRLTASSYYMDSDYEDNSASQFSGETDSDEPLLRDEFKCKVCGRQFPSAKSLAAHTRIHSSKTSKAKDTFPENVLVTIPKKNIQDATDVEDNISCDQCGKSFKLKIMLKRHHETCGKSPQKSPPKTPAKPIQKELLISLEPIDGIHPNRINCSMCTTTFKTTENLEKHMRVVHAAVLPQVKAEPEASNGKVSVPCIYCKKPFDDYYVHSEHFSKCPESTNATTFSCPVCEKVTSKKSAYFKHIKDIHFEPRMWALKPDQQAQEQAAPQELFQCRMCYKQLGTEQLLITHLAAHVSNIEETGDESRYVASTRPHPSPPHPTRNTTPHHTTPHQTASRVGPSTIEDSSSIVSDNSGGGPGGPQKCKYCDKSFKYKKSLVNHEMKHFQLEKTEQSQKQEKCMNEDTEIEAGANASTSLVDECYREESESSQEEGDDKTCDICEKQFSYRRLLVHHKRTKHNMSSGTKRSSVVLKHCLVRCLICDLEMSVAALNDHNKKHIQQNMKPRNLYTCSDCGDKFKSCNALANHIKLVHRLKRLPPKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPEEQGGEPLVNLSGFNCTICGKNMPTLISLKRHVNWHSNVGKNLEKKLECFVCKETFRFQCHYKLHMREHYRDTNLDPALLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDLLPTTADKAVFDGTHTCLHCGKVCDSENSLKHHMSWHKSKTLLFGARHECPICHIMFTNKKRQELHTRTHYEDDNGPFKCTICGKGYTDEDYFRRHVKGHNFDHQSHKDRIARLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKQDPDAPASAPRVFSCKLCAKSFRDERRLRHHEESHLRKPEFFKCKFCGKKTISLKNHNVHIKGHLTSKQVDNPFKCPQCDETFIKGYDLHHHLRDVHDINETWIADRNEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLIGDTEIYSRKIKCYVCYKPFHLQVKLDCHLRTQHGIKVSKEASKSKKDLVCDYCFRVFENLDALTGHKIYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIIMPKESIEETCPICGKVFFNLHRHLDYHEANRCKKCGEYFYSRTDLDNHLCAIESDDEAAAGVDLDVRPKYEECRFCFKPITRKTSKAKHDVIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRNRKYRKNPLKCRKCGEKFIQYGPFIKHMRGVHKFVQKMHYRATVKAEPCVVCGDEFPNLHNHYRAHLQNQCTSCLKYFTSAKVFAEHECGKEDSDPTKVFTCDANLPLLINTYVPKDVQDEQKYYGYGDEEEEEDSGVRLQGHIMDEESQNWNENEHFRLQCPIISDVLSLYQTQAEAQAQAPAPDPDVIDLSDDEVGVVDDQATCPIITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00871563; iTF_01134035; iTF_00659637; iTF_00409528; iTF_00411706; iTF_00680857; iTF_01072797; iTF_00656368; iTF_00149684; iTF_00289887; iTF_00657487;
90% Identity: -
80% Identity: -