Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352289.1:32114185-32119384[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 2.7e-05 0.003 19.3 0.3 1 23 120 142 120 142 0.98

2 27 0.0043 0.47 12.4 1.3 2 21 177 196 176 197 0.92

3 27 1.3e-05 0.0014 20.3 0.5 2 23 238 260 237 260 0.96

4 27 6.4e-05 0.0071 18.1 0.4 1 23 311 334 311 334 0.95

5 27 0.32 36 6.5 0.1 1 23 356 378 356 378 0.95

6 27 7e-05 0.0078 18.0 3.7 2 23 411 432 410 432 0.97

7 27 0.0018 0.2 13.6 3.7 2 23 484 506 484 506 0.97

8 27 0.0011 0.13 14.2 1.0 1 23 556 579 556 579 0.97

9 27 0.0055 0.62 12.0 0.2 1 23 635 657 635 657 0.97

10 27 0.027 3 9.9 6.1 2 23 669 690 668 690 0.96

11 27 0.047 5.2 9.1 1.8 2 23 702 723 701 723 0.96

12 27 0.0042 0.47 12.4 1.0 1 23 733 755 733 755 0.98

13 27 0.0098 1.1 11.3 7.2 1 23 783 805 783 805 0.97

14 27 0.014 1.6 10.7 4.3 1 23 816 838 816 838 0.98

15 27 0.00014 0.016 17.0 1.3 1 23 846 868 846 868 0.97

16 27 0.00073 0.081 14.8 0.1 2 23 888 910 887 910 0.97

17 27 0.016 1.7 10.6 2.4 1 23 928 950 928 950 0.96

18 27 0.13 14 7.8 3.3 1 23 957 979 957 979 0.97

19 27 0.0027 0.3 13.1 4.2 1 23 989 1012 989 1012 0.96

20 27 0.0041 0.45 12.5 0.3 1 23 1034 1056 1034 1056 0.97

21 27 0.012 1.3 11.0 0.1 2 23 1137 1158 1136 1158 0.94

22 27 0.42 47 6.1 4.4 5 23 1168 1186 1165 1186 0.94

23 27 0.018 2 10.4 0.8 2 23 1197 1219 1196 1219 0.95

24 27 0.9 1e+02 5.1 2.5 2 23 1236 1254 1236 1254 0.89

25 27 1.3 1.5e+02 4.6 2.5 2 23 1326 1347 1325 1347 0.93

26 27 0.00099 0.11 14.4 0.3 2 23 1358 1380 1357 1380 0.95

27 27 4.6 5.1e+02 2.9 0.3 3 23 1397 1414 1396 1414 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	2.7e-05	0.003	19.3	0.3	1	23	120	142	120	142	0.98
2	27	0.0043	0.47	12.4	1.3	2	21	177	196	176	197	0.92
3	27	1.3e-05	0.0014	20.3	0.5	2	23	238	260	237	260	0.96
4	27	6.4e-05	0.0071	18.1	0.4	1	23	311	334	311	334	0.95
5	27	0.32	36	6.5	0.1	1	23	356	378	356	378	0.95
6	27	7e-05	0.0078	18.0	3.7	2	23	411	432	410	432	0.97
7	27	0.0018	0.2	13.6	3.7	2	23	484	506	484	506	0.97
8	27	0.0011	0.13	14.2	1.0	1	23	556	579	556	579	0.97
9	27	0.0055	0.62	12.0	0.2	1	23	635	657	635	657	0.97
10	27	0.027	3	9.9	6.1	2	23	669	690	668	690	0.96
11	27	0.047	5.2	9.1	1.8	2	23	702	723	701	723	0.96
12	27	0.0042	0.47	12.4	1.0	1	23	733	755	733	755	0.98
13	27	0.0098	1.1	11.3	7.2	1	23	783	805	783	805	0.97
14	27	0.014	1.6	10.7	4.3	1	23	816	838	816	838	0.98
15	27	0.00014	0.016	17.0	1.3	1	23	846	868	846	868	0.97
16	27	0.00073	0.081	14.8	0.1	2	23	888	910	887	910	0.97
17	27	0.016	1.7	10.6	2.4	1	23	928	950	928	950	0.96
18	27	0.13	14	7.8	3.3	1	23	957	979	957	979	0.97
19	27	0.0027	0.3	13.1	4.2	1	23	989	1012	989	1012	0.96
20	27	0.0041	0.45	12.5	0.3	1	23	1034	1056	1034	1056	0.97
21	27	0.012	1.3	11.0	0.1	2	23	1137	1158	1136	1158	0.94
22	27	0.42	47	6.1	4.4	5	23	1168	1186	1165	1186	0.94
23	27	0.018	2	10.4	0.8	2	23	1197	1219	1196	1219	0.95
24	27	0.9	1e+02	5.1	2.5	2	23	1236	1254	1236	1254	0.89
25	27	1.3	1.5e+02	4.6	2.5	2	23	1326	1347	1325	1347	0.93
26	27	0.00099	0.11	14.4	0.3	2	23	1358	1380	1357	1380	0.95
27	27	4.6	5.1e+02	2.9	0.3	3	23	1397	1414	1396	1414	0.77

Sequence Information

Coding Sequence: ATGCTTTCAGGTTCCAGTTCCACACCGGTCCCGGCTAACAGGACCAGTAGTGACTCTGTTTCCTCCATCCACACTGAAGCGACCAGCCAAACCAAACCATCGCAAGCCTCTGAGGTGGATTCTACTATAAAGAACAGTCGGAAACGTAGTCACGAAAGTCTGGAAATTGCTTCTGCCAGTAGCAAATCTAACGAATTTCGACCCACCAGTTCAAAACGAGTAGAGGAACTCAAAAATAGTAACAAGAGGCCCAGGTTGACAGCTAGCAATTATTATATGGATTCAGACTACGAAGACAACAGTGCTTCTCAATTCTCGGGAGAAACTGACTCTGACGAACCTTTATTGAAAGATGAATTCAAGTGTAAAGTTTGCGATCGCCAGTTCCCTTCGCCGAAAAGTTTAGCGGCGCACTCCAGGATTCATTCCGGCAAAACAAACAAGACAAAAGACACTCTCCCTGAAAATGTACTTGTTACAATCCCAAAGAAAAATATACAGGATGCGGCTGATGTAGAGGACAAAATTAGTTGCGATAAATGTGAAAAAACTTTCAAATTGAAAATAATGCTGAAACGGCACCATGAGACCTGCGGAAAGACTCCGCATAAAACTCCACCCAAGACCCCGCCCGAGACACCACCGAAGCCCATCCAGAAAGAGTTACTTATAACCCTCGAACCCATTGACGGTATTCAGACGAGCAGAATAAGTTGTACCATGTGCACAACCACTTTCAAAACCATCGAGAATCTGGAAAAGCATATGAGAGTGGTTCATGCAGCTGTATTGCCACAAGTCAAATCGGAGCCCAAAGCAAGCAACGGGAAGGTCTCCGTGCCTTGCATATACTGTAGAAAACCATTCGACGACTATTATGTACACAGTGAACATTTTAGTAAATGCCCTGAAAGTACTAACGCTACCACGTTTCCGTGCCCCGTTTGCAAAAAGGTGTTATCACGAAAATCGGCGTACTTCAAGCACATTAAGGACATTCACTTTGAGCCGCGCATGTGGTCGCTGAAGCCGGACCCGCAGGAGCAGGCGGGCCCGCAGGAGCTGTTCGAGTGCCGCATGTGCTACAAGCAGCTGGCCACGGAGCAGCTGCTCATCACGCACCTGGCCGCGCACGTGTCCAACATCGAGGAGCCCGGCGACGAGTCCAGACCAAGCACTATTGAAGATTCTTCGTCAATAGTGTCCGACAACAGTGGCGGCGGTCCCAAGAAGTGTAAATACTGCGATAAAAGTTTCAAGTATAAGAAATCTTTAGTGACCCACGAAATGAAACATTTCCAACTTGAGAAAACAGAGCAAACTCGAAACCAAGAAAAGACAATAAATGAAGATACAGAAATAGAAGGGGAAGCTAACGCATCGAGCAGCCTGGTTAACGCGTCGTACCGGTCCGAGTCGGAGTCGAGCGGGTCGGAGGGCGACGGCAACACGTGCGACATCTGCGAGAAGCAGTTCTCGTACCGCCGTCTGCTCGTGCACCATAAGCGCACCAAGCACAACATGAGCTCTGGCACCAAGCGCTCCAGCGTCGTGCTCAAGAACTGCCTCGTGCGCTGTCTCATCTGCGATCTCGAGATGAGCGTCGGCGCGCTCAACGACCACAACAAAAAGCACATCCAGCAGAACATGAAGCCGCGCAACCTCTACACCTGCTCCGACTGCGGCGACAAGTTTAAGAGCTGCAACGCTCTGGCTAATCACATCAAGTTGGTGCACAGGCTGAAGAAACTGCCCCCAAAGCAATTTGAAGGCGCTGACTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCCCTGGATGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGCGGAGGGGGAGGGCGAGCCCTTAGTCAATCTCAGTGGATTTAACTGCACTATTTGCGGAAAGAACATGCCCACTCTAATTTCTCTGAAACGACATGTCAATTGGCATTCAAACGTTGGGAATAATTTGGAAAAAAAGCTAGAATGCTTTGTTTGCAAAGAGACTTTCCGATTTCAATGCCATTACAAGCTGCACATGCGCGACCACTATCGCGACACCAATCTTGATCCCAAACTGCTCACTTGCACGATTTGCAATCGCAAAAGCAAACATTTGAGAGCGGCTCAGGCGCATATGAACTATCACAAACAAACCAGATTCAAGAATAAAGACTATCAGTGCTCTATATGCAAACGCGTTTTTCAATACCGGAAAGTTTATCTATCTCACATGGCTATACACTACAAGCGTGGTGAGAGCCAGAACACGATCGTAGGTGATTTACTGCCTACCACTGCTGATAAAACGGTTTTTGATGGCACCCATACTTGCCTTCATTGTGGAAAAGTGTGTGATTCTGAGAACTCGTTAAAACATCACATGTCTTGGCACAAATCGAAGACTTTACTGTTTGGCGCTCGGCATGAATGCCCGATTTGCCACGTGATGTTCACTAATAAGAAAAGGCAGGAACTACATACACGGACTCATTATGAAGACGATAACGGTCCATTCAAGTGTACAATATGCAGCAAAGGTTACACAGACGAAGATTATTTCCGCAGGCACGTGAAAGGTCACAACTTTGATCACCAGTCTCACAAAGACAGAATAGCCCGGCTGCGAAAGGACAAGGTGAAGTGCCCCATCTGCGTGCGCTACTACCCCGACTGGGTGAAGCTGATCCGGCACCTGCGGCGCACGCACCCCGAGAGCAAGATGGTGAAGGAGGACCCGGACGCGCCCGCGCCGCGCGTCTTCTCCTGCAAGCTGTGCGCCAAGGTGTTCCGCGACGAGCGCCGGCTGCGCCACCACGAGGACTCGCATCTGCGCAAGCCAGAGTTCTTCAAGTGCAAGTTTTGCGGTAAGAAAACCATATCGCTCAAAAATCACAATGTGCACATTAAAGGACATCTCACTTCCAAACAGTTCGACAATCCATTCAAATGCCCTCATTGCGAGGAAACGTTCATCAAGGGATACGACTTGCATCACCATTTGCGAGACGTGCACGACATCGTTGAAACTTGGATTGCCGATCGCAACGAGCAATCGCTAAATGGACCCTTGAAAGAGTTTCAATGCTCAATCTGCCTTAAAATACTCGCAAGTAAGGGTAACTACGAGAGGCACTTGGATTACCACAACTCGTTGCGATGCAACTACTGCTACGACTATTTTAGTTCGTTGAGGTTCCTGGAAGGACATTTGACTTTCAGCTGTGATAAAAAGAAGTTGATCGGTGACACTGAAATATATCCAAGGAAGATTAAATGTTATGTCTGCTACAAACCATTCCATTTACAAGTGAAACTGGATTGCCATTTACGTACACAACACGGTATAAAAGTGTCTAAGGAGGCGTCCAAGAGCAAAAAAGATCTCGTATGTGATTATTGCTTTAGAGTATTCGAAAACCTTGACGCTTTGACTGGACATAAAATTTATCATCGTACAGTTGGTTATTATGGATGCATATATTGCAAACGAAAATTCAACACGCTGTCTCTCTACAGGAAACATAAGAACCACCACTTTGCTCAGCTAAATGTCGAGAACCCTACCAAGTGCGAACACTGCGACGAGACCTTCGTCGCGTTCCGAGAAATGATCTACCACATGAGAGACGTGCACGGAGACGACAAAGAATGGCTCGTAATGCCAAAGGAGTCCATCGAGGAGACGTGCCCCATATGTAGGAAGGTGTTCTTCAACCTGCACCGTCACCTTGACTACCACGAGGCGAACCGCTGCAAGAAGTGTGGCGAATACTTCTACTCGCGCACCGACTGCGACAACCACCTGTGCGCCATCGAGAGTGACGACGAGGTGGGCAGCGCGGACCAGGACGTGCACCCCAAGTACGAAGAGTGCCGCTTCTGCTTCAAGCCCATCACCAGGAAAAGCTCCAAGGCGAAGCACGATGTCATACATAAAGGATCTGGCTCCATTTCCTGTAGGTTCTGTTCACATAAATTTAGAACGATGGACGCGTTCAACATTCATGCGTTTTCCCATCGCAACCGCAAGTACAGAAAAAATCCATTGAAGTGTCGTAAATGTGGGGAGAAATTCATTCAATACGGGCCTTTCATAAAACATATGAGAGGGGTGCACAAGTTCGTGCAAAAAATGCACTATCGAGCGACCGTAAAAGCGGAACCCTGCGTAGTGTGCGGGGAAGAGTTCCCTAATTTGCACAACCACTACCGAGCGCATCTGCAGAACCAGTGCACCTCGTGTCTCAAGTACTTCACCTCCGCTAAGGTGTTCGCCGAGCACGACTGCGGCAAGGAAGACTCCGACCCCACCAAGGTATTCAAGTGCGGCGAGAACTTGCAGCTCTTGATCAACACCTATGTTCCCAAGGACGAACAGGACGAACAAAAGTATTACGGTTACGGCAGCGAGGAGGAAGAGGAAGACGGTGGAGTGCGGCTGCAGGGCCACATTATGGATGAGGAAAGTCAGAATTCCAACGAGCACTTCCAGCTGCAATGTCCCATCATATCGGACGTACTGTCGCTGTACCAGACGCGGGGCGAGGGGGCGGCGTGCGCGGACCTGGACACCGACGTTATCGACCTGTCCGACGACGACGTGGGCGTGGTCGACGACCAAGCCACGTTTCCCACCATTACCATTGACGATTAA
Protein Sequence: MLSGSSSTPVPANRTSSDSVSSIHTEATSQTKPSQASEVDSTIKNSRKRSHESLEIASASSKSNEFRPTSSKRVEELKNSNKRPRLTASNYYMDSDYEDNSASQFSGETDSDEPLLKDEFKCKVCDRQFPSPKSLAAHSRIHSGKTNKTKDTLPENVLVTIPKKNIQDAADVEDKISCDKCEKTFKLKIMLKRHHETCGKTPHKTPPKTPPETPPKPIQKELLITLEPIDGIQTSRISCTMCTTTFKTIENLEKHMRVVHAAVLPQVKSEPKASNGKVSVPCIYCRKPFDDYYVHSEHFSKCPESTNATTFPCPVCKKVLSRKSAYFKHIKDIHFEPRMWSLKPDPQEQAGPQELFECRMCYKQLATEQLLITHLAAHVSNIEEPGDESRPSTIEDSSSIVSDNSGGGPKKCKYCDKSFKYKKSLVTHEMKHFQLEKTEQTRNQEKTINEDTEIEGEANASSSLVNASYRSESESSGSEGDGNTCDICEKQFSYRRLLVHHKRTKHNMSSGTKRSSVVLKNCLVRCLICDLEMSVGALNDHNKKHIQQNMKPRNLYTCSDCGDKFKSCNALANHIKLVHRLKKLPPKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPAEGEGEPLVNLSGFNCTICGKNMPTLISLKRHVNWHSNVGNNLEKKLECFVCKETFRFQCHYKLHMRDHYRDTNLDPKLLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDLLPTTADKTVFDGTHTCLHCGKVCDSENSLKHHMSWHKSKTLLFGARHECPICHVMFTNKKRQELHTRTHYEDDNGPFKCTICSKGYTDEDYFRRHVKGHNFDHQSHKDRIARLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKEDPDAPAPRVFSCKLCAKVFRDERRLRHHEDSHLRKPEFFKCKFCGKKTISLKNHNVHIKGHLTSKQFDNPFKCPHCEETFIKGYDLHHHLRDVHDIVETWIADRNEQSLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLIGDTEIYPRKIKCYVCYKPFHLQVKLDCHLRTQHGIKVSKEASKSKKDLVCDYCFRVFENLDALTGHKIYHRTVGYYGCIYCKRKFNTLSLYRKHKNHHFAQLNVENPTKCEHCDETFVAFREMIYHMRDVHGDDKEWLVMPKESIEETCPICRKVFFNLHRHLDYHEANRCKKCGEYFYSRTDCDNHLCAIESDDEVGSADQDVHPKYEECRFCFKPITRKSSKAKHDVIHKGSGSISCRFCSHKFRTMDAFNIHAFSHRNRKYRKNPLKCRKCGEKFIQYGPFIKHMRGVHKFVQKMHYRATVKAEPCVVCGEEFPNLHNHYRAHLQNQCTSCLKYFTSAKVFAEHDCGKEDSDPTKVFKCGENLQLLINTYVPKDEQDEQKYYGYGSEEEEEDGGVRLQGHIMDEESQNSNEHFQLQCPIISDVLSLYQTRGEGAACADLDTDVIDLSDDDVGVVDDQATFPTITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00412737;
90% Identity: -
80% Identity: -