Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421901.1:30087209-30092845[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.00061 0.054 15.2 0.4 1 23 120 142 120 142 0.98

2 27 0.0027 0.24 13.2 0.6 2 21 177 196 176 197 0.92

3 27 4e-06 0.00035 22.1 0.5 3 23 235 256 233 256 0.96

4 27 5e-05 0.0044 18.7 0.5 1 23 307 330 307 330 0.95

5 27 0.21 18 7.3 0.2 1 23 352 374 352 374 0.96

6 27 3.4e-05 0.003 19.2 3.3 2 23 407 428 406 428 0.97

7 27 0.0021 0.18 13.6 3.7 2 23 480 502 480 502 0.97

8 27 0.0013 0.11 14.2 1.0 1 23 552 575 552 575 0.97

9 27 0.0063 0.56 12.1 0.2 1 23 631 653 631 653 0.97

10 27 0.022 1.9 10.4 6.1 2 23 665 686 664 686 0.96

11 27 0.053 4.7 9.1 1.8 2 23 698 719 697 719 0.96

12 27 0.0049 0.43 12.4 1.0 1 23 729 751 729 751 0.98

13 27 0.011 0.98 11.3 7.2 1 23 779 801 779 801 0.97

14 27 0.01 0.9 11.4 4.7 1 23 812 834 812 834 0.98

15 27 2.8e-05 0.0025 19.4 0.8 1 23 842 864 842 864 0.97

16 27 0.0039 0.34 12.7 0.1 2 23 884 906 883 906 0.97

17 27 0.0033 0.29 13.0 1.1 1 23 924 946 924 946 0.96

18 27 0.14 13 7.8 3.3 1 23 953 975 953 975 0.97

19 27 0.0035 0.31 12.9 2.8 1 23 985 1008 985 1008 0.96

20 27 0.0047 0.41 12.5 0.3 1 23 1030 1052 1030 1052 0.97

21 27 0.014 1.2 11.0 0.1 2 23 1133 1154 1132 1154 0.94

22 27 2 1.8e+02 4.2 4.5 5 23 1164 1182 1161 1182 0.94

23 27 0.025 2.2 10.2 0.8 2 23 1193 1215 1192 1215 0.95

24 27 0.065 5.7 8.9 1.8 2 23 1232 1250 1232 1250 0.89

25 27 0.16 14 7.7 1.8 2 21 1254 1273 1254 1274 0.94

26 27 1.6 1.4e+02 4.5 2.6 2 23 1322 1343 1321 1343 0.93

27 27 0.0011 0.1 14.4 0.3 2 23 1354 1376 1353 1376 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.00061	0.054	15.2	0.4	1	23	120	142	120	142	0.98
2	27	0.0027	0.24	13.2	0.6	2	21	177	196	176	197	0.92
3	27	4e-06	0.00035	22.1	0.5	3	23	235	256	233	256	0.96
4	27	5e-05	0.0044	18.7	0.5	1	23	307	330	307	330	0.95
5	27	0.21	18	7.3	0.2	1	23	352	374	352	374	0.96
6	27	3.4e-05	0.003	19.2	3.3	2	23	407	428	406	428	0.97
7	27	0.0021	0.18	13.6	3.7	2	23	480	502	480	502	0.97
8	27	0.0013	0.11	14.2	1.0	1	23	552	575	552	575	0.97
9	27	0.0063	0.56	12.1	0.2	1	23	631	653	631	653	0.97
10	27	0.022	1.9	10.4	6.1	2	23	665	686	664	686	0.96
11	27	0.053	4.7	9.1	1.8	2	23	698	719	697	719	0.96
12	27	0.0049	0.43	12.4	1.0	1	23	729	751	729	751	0.98
13	27	0.011	0.98	11.3	7.2	1	23	779	801	779	801	0.97
14	27	0.01	0.9	11.4	4.7	1	23	812	834	812	834	0.98
15	27	2.8e-05	0.0025	19.4	0.8	1	23	842	864	842	864	0.97
16	27	0.0039	0.34	12.7	0.1	2	23	884	906	883	906	0.97
17	27	0.0033	0.29	13.0	1.1	1	23	924	946	924	946	0.96
18	27	0.14	13	7.8	3.3	1	23	953	975	953	975	0.97
19	27	0.0035	0.31	12.9	2.8	1	23	985	1008	985	1008	0.96
20	27	0.0047	0.41	12.5	0.3	1	23	1030	1052	1030	1052	0.97
21	27	0.014	1.2	11.0	0.1	2	23	1133	1154	1132	1154	0.94
22	27	2	1.8e+02	4.2	4.5	5	23	1164	1182	1161	1182	0.94
23	27	0.025	2.2	10.2	0.8	2	23	1193	1215	1192	1215	0.95
24	27	0.065	5.7	8.9	1.8	2	23	1232	1250	1232	1250	0.89
25	27	0.16	14	7.7	1.8	2	21	1254	1273	1254	1274	0.94
26	27	1.6	1.4e+02	4.5	2.6	2	23	1322	1343	1321	1343	0.93
27	27	0.0011	0.1	14.4	0.3	2	23	1354	1376	1353	1376	0.95

Sequence Information

Coding Sequence: ATGTTTGCAGGTTCGAGTTCCACACCAGTCCAGCCCAACAGGACCAGCAGTGATTCCGTTTCTTCCGTCCACACTGAGGCGACAAACCAAACCAAACCGTCGCAACCCTCAGATATGGACTCTACTAAAAGAAACAGTCGAAAACGTAGTCACGAAAGTATGGAAATCGCTTCTGCCAGCAGCAAATCTAATGATTTTCGGCCCACCAGTTCAAAACGAGTTGAGGAATTAAAAAGTAGTCATAAAAGGCCTAGACTGACAGCCAGCAATTATTATATGGATTCAGACTACGAAGACAACAGCGCGTCACAAATCTCAGGTGAAACAGACTCTGACGAACCCTTGCTGAGAGACGAATTCAAGTGTAAAGTATGCGCTCGACAGTTCCCGTCGTCAAAGAGCTTAGCGGCGCACTCCAGGATTCATTCAGGTAAAACAAACCAGGCAAAAGAAACTCTTCCTGAAAATGTAGTCGTCACAATTCCAAAGAAAAATATACAGGATGCGACAGATGTAGAGGATAAAATTAGCTGCGATAAATGCGAAAAGACTTTCAAATTGAAAATTATGCTGAAACGTCACTACGAGACCTGCGGCAAGTCGCCGCAAAAGACTCCTCCTACGACACCACCCAAACCAATTCAGAAGGAGTTACTTATAACGCTGGAACCTATAGATGGTATTCATACGAAAATAATTAACTGTCCCATGTGCACTACTACATTCAAAACTACGGAAAATTTGGAAAAGCACATGAGAGTGGTACATGCGGCTGTCCTGCCACAAGTTAAAACGGAGCCCAAAGCGAGCAACGGGAAGGTTTCCGTGCCTTGCATTTACTGTAAAAAACCATTCGACGACTATTATGTGCACAGTGAACACTTTAGTACATGCCCTGAAAGTACTAACGCTACCACATTTCCGTGTCCCGTTTGCAAAAAGGTGACATCGAGAAAATCGGCGTACTTCAAGCACATTAAGGACATTCACTTTGAACCACGAATGTGGTCGCTGAAGCCCGACCCGCAAGAGCAGGCGGGACCGCAGGAGTTGTTCCAGTGCCGCATGTGCTACAAGCAGCTCGCCACGGAGCAGCTGCTGATCACGCACCTGGCCGCGCACGTGTCCAACATCGAGGAGACCGGCGACGAGTCCAGGCCAAGCACTATTGAAGATTCATCGTCAATAGTGTCTGACAAGAGTGGCGGTGGTCCCCAGAAGTGTAAATATTGCGataaaagtttcaaatataagaAATCGTTAATAACTCACGAGATGAAACATTTTGAATTCGAGAAAACAGAACAAAATCAAAAACAAGAAAAGTCCGCGAATGAAGACACTGAAATGGAGGCAGAAGCTAACGCGTCGAGTAGCTTGCTGAATGAGTCGTACCGCGAGGAGTCGGAGTCCAGCCAGGAAGAGGGCGACGACAACACGTGCGACATCTGCGAGAAGCAGTTCTCGTACCGGCGGCTGCTCGTGCACCACAAGCGCACCAAGCACAACATGAGCTCCGGTACCAAGCGCTCCAATGTCGTGCTCAAAAACTGCATCGTGCGCTGTCTCATCTGCGATCTCGAGATGAGCGTCGGCGCGCTTAACGACCACAACAAGAAGCACATCCAGCAGAACATGAAGCCACGCAATCTGTACACCTGCTCCGACTGCGGCGACAAGTTCAAGAGCTGCAACGCCCTGGCGAACCATATAAAGCTGGTGCACAGGCTGAAGAAACTGCGGCCGAAGCAGTTCGAAGGCGCTGACTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAACGGAACCCCTGGACGAGATCCAGAGTCACAACGGCTTTGGCGAGGTTCCGGAGGGACAGGAGGGCGAGCCCTTGGTCAATCTCAGCGGATTTAACTGCACTATTTGCGGAAAGAACATGCCCACTCTAATTTCTCTGAAACGACATGTCAATTGGCATTCAAATGTTGGaaataatttggaaaaaaaGCTGGAATGCTTTGTTTGCAAAGagacTTTCCGATTTCAATGCCACTACAAGCTTCATATGCGCGAACACTATCGTGACACCAATCTTGACCCCAAGTTGCTCACTTGCACCATCTGCAATCGGAAAAGCAAACATTTGAGAGCGGCCCAGGCGCACATGAACTATCACAAACAAACCCGATTCAAGAATAAAGACTATCAGTGCTCCATATGTAAACGCGTTTTTCAATACCGGAAGGTTTATCTCTCTCACATGGCTATACACTACAAACGTGGTGAAAGTCAGAACACTATTGTAGGTGATTTATTGCCTACCACAGCCGATAAAACCGTTTTCGATGGCTCCCATACTTGCCTTCACTGTGGAAAAGTCTGTGATTCTGAGAACTCATTAAAACACCACATGTCATGGCACAAATCGAAGACTTTACTGTTTGGTGCGCGACACGAATGCCCAATATGTCACGTTACGTTTACTAATAAAAAGAGGCAAGAACTTCATACGCGGACTCATTATGAAGATGATAACGGACCATTTAAATGTACGGTATGCGGTAAAGGTTACACTGACGAAGATTATTTCCGCAGGCACGTGAAAGGTCATAATTTTGATCACCAGTCTCACAAGGATAGGATAGCCCGGCTGCGGAAGGATAAAGTGAAGTGTCCCATCTGCGTACGATACTATCCCGACTTGGTGAAGCTGATCCGTCACCTGCGGCGCACGCATCCCGAGAGCAAGATGGTGAAGGAGGACCCCGACGCGCCCGCGCCGCGGGTGTTCTCCTGCAAGCTGTGCGCTAAGGTGTTCCGCGACGAGCGCCGCCTGCGCCGCCACGAGGACTCGCATCTGCGCAAACCAGAGTTCTTCAAGTGCAAGTTCTGCGGCAAGAAAACTATATCGCTCAAAAATCATAATGTGCACATTAAAGGACATCTCACTTCTAAACAATTCGACAATCCGTTTAAATGTCCCCAGTGCGAAGAAACATTCATTAAGGGCTACGATTTGCATCACCATTTGCGAGATATGCACAATATTAATGAAACGTGGATTGCCGATCGCAACGAGCAAACGCTAAATGGGCCTTTGAAAGAGTTTCAATGCTCTATTTGCCTCAAAATACTTGCAAGTAAGGGTAACTATGAAAGGCACTTGGATTACCACAATTCTCTGAGATGCAACTACTGCTACGATTACTTTAGTTCACTGAGGTTCCTGGAAGGACATTTGACTTTCAGCTGTGACAAAAAGAAGTTGGTTGGTGACACTGAAATATATCCGAGGAAGATTAAATGTTATGTCTGTTACAAACCCTTCCATTTACAAGTGAAACTGGATTGTCATCTGCGGACACAACACAGTATAAAAGTGTCTAAGGAGGCTTCAAAGAGCAAAAAGGATCTTGTATGTGATTATTGTTTTAGAGTATTTGAAAACCTCGATGCTTTGACTGGACATAAAATTTATCATCGGACAGTCGGTTATTATGGATGCATATATTGCAAACGAAAATTCAACACTTTGACTCTCTACAGGAAACATAAGAACCATCACTTTGCGCAACTAAATGTGGATAACCCTACCAAGTGCGAACACTGCGACGAAACCTTCATCGCTTTTCGAGAAATGATTTACCACATGAGAGATGTGCACGGAGACGATAAGGAATGGATCATAATGCCAAAGGAGTCCATCGAGGAGACATGTCCCATTTGCGGGAAGGTGTTCTTCAACCTGCACCGGCATCTCGACTACCACGAGGCCAACCGCTGCAAGAAGTGCGGCGAGTACTTCTACTCGCGCACCGACTTCGACAACCATCTGTGCGCCATCGAGAGTGACGACGAGGTGGGCAGTGTAGCACAGGACGTGCGCCCCAAGTACGAGGAGTGCCGCTTCTGCTTCAAGCCCATCACCAGGAAGAGCTCCAAGGCCAAGCACGATCACATACATAAAGGTTCCGGTTCAATTTCCTGCAGGTTCTGCTCACATAAGTTTAAAACAATGGATGCGTTCAATATTCATGCGTTTTCTCATCGCAACcgcaagtacaggaaaaatccaTTGAAGTGTCGTAAATGTGGGGAGAAATTCATTCAATACGGGCCTTTCATAAAGCATATGAGAGGCGTTCATAAGTTTGTCCAAAAAATGCACTACCGAGCGACCGTAAAAGCGGAACCTTGCATAGTATGCGGGGATGAGTTCCCCAATCTGCACAACCACTACCGAGCGCATCTGCAGAACCAGTGCACAGCGTGTCTCAAGTATTTCACCTCCGCCAAAGTGTTTGCCGAGCACGAGTGCGGCAAGGAGGACTCCGACCCCGCCAAGGTGTTCAAGTGCGACGCGAATTTGCCGCTAATGATAAACACTTACGTGCCTAAGGACGAACAGGACGAACAAAAGTATTACGGCTACGGCAGCGAGGAGGAGGAAGATACCGAAGTGCGGCTGCAGGGACATATTATGGATGAGGAAAGTCAGAATTCTAACGAAAACGAGCACTTTCAGTTGCCGTGTCCCATAATTTCGGATGTGCTGTCACTGTACCAGAAGCAGGACGAGGTCGCGGCGCGCAAACAGCCCGACCCCGACGTCATCGACCTGTCCGACGACGACGTGGGCGTCGTCGACGACCAAGGCGAGTGTCCCACCATTATCATTGATgactaa
Protein Sequence: MFAGSSSTPVQPNRTSSDSVSSVHTEATNQTKPSQPSDMDSTKRNSRKRSHESMEIASASSKSNDFRPTSSKRVEELKSSHKRPRLTASNYYMDSDYEDNSASQISGETDSDEPLLRDEFKCKVCARQFPSSKSLAAHSRIHSGKTNQAKETLPENVVVTIPKKNIQDATDVEDKISCDKCEKTFKLKIMLKRHYETCGKSPQKTPPTTPPKPIQKELLITLEPIDGIHTKIINCPMCTTTFKTTENLEKHMRVVHAAVLPQVKTEPKASNGKVSVPCIYCKKPFDDYYVHSEHFSTCPESTNATTFPCPVCKKVTSRKSAYFKHIKDIHFEPRMWSLKPDPQEQAGPQELFQCRMCYKQLATEQLLITHLAAHVSNIEETGDESRPSTIEDSSSIVSDKSGGGPQKCKYCDKSFKYKKSLITHEMKHFEFEKTEQNQKQEKSANEDTEMEAEANASSSLLNESYREESESSQEEGDDNTCDICEKQFSYRRLLVHHKRTKHNMSSGTKRSNVVLKNCIVRCLICDLEMSVGALNDHNKKHIQQNMKPRNLYTCSDCGDKFKSCNALANHIKLVHRLKKLRPKQFEGADLADFCEVVVTKTEPLDEIQSHNGFGEVPEGQEGEPLVNLSGFNCTICGKNMPTLISLKRHVNWHSNVGNNLEKKLECFVCKETFRFQCHYKLHMREHYRDTNLDPKLLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDLLPTTADKTVFDGSHTCLHCGKVCDSENSLKHHMSWHKSKTLLFGARHECPICHVTFTNKKRQELHTRTHYEDDNGPFKCTVCGKGYTDEDYFRRHVKGHNFDHQSHKDRIARLRKDKVKCPICVRYYPDLVKLIRHLRRTHPESKMVKEDPDAPAPRVFSCKLCAKVFRDERRLRRHEDSHLRKPEFFKCKFCGKKTISLKNHNVHIKGHLTSKQFDNPFKCPQCEETFIKGYDLHHHLRDMHNINETWIADRNEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLVGDTEIYPRKIKCYVCYKPFHLQVKLDCHLRTQHSIKVSKEASKSKKDLVCDYCFRVFENLDALTGHKIYHRTVGYYGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFIAFREMIYHMRDVHGDDKEWIIMPKESIEETCPICGKVFFNLHRHLDYHEANRCKKCGEYFYSRTDFDNHLCAIESDDEVGSVAQDVRPKYEECRFCFKPITRKSSKAKHDHIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRNRKYRKNPLKCRKCGEKFIQYGPFIKHMRGVHKFVQKMHYRATVKAEPCIVCGDEFPNLHNHYRAHLQNQCTACLKYFTSAKVFAEHECGKEDSDPAKVFKCDANLPLMINTYVPKDEQDEQKYYGYGSEEEEDTEVRLQGHIMDEESQNSNENEHFQLPCPIISDVLSLYQKQDEVAARKQPDPDVIDLSDDDVGVVDDQGECPTIIIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00412737;
90% Identity: iTF_00409528;
80% Identity: -