Basic Information

Insect: Cydia pomonella
Gene Symbol: -
Assembly: GCA_033807575.1
Location: CM066344.1:27805139-27826642[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 2.6e-05 0.0022 19.6 0.2 1 23 120 142 120 142 0.98

2 27 0.0014 0.12 14.1 0.6 2 22 177 197 176 197 0.93

3 27 2.3e-05 0.0019 19.8 0.5 3 23 235 256 233 256 0.96

4 27 0.00022 0.019 16.7 1.0 1 23 307 330 307 330 0.95

5 27 0.38 32 6.5 0.1 1 23 354 376 354 376 0.95

6 27 3.2e-05 0.0027 19.3 3.1 2 23 409 430 408 430 0.97

7 27 0.0022 0.18 13.6 3.7 2 23 482 504 482 504 0.97

8 27 0.0012 0.1 14.4 1.1 1 23 554 577 554 577 0.97

9 27 0.0066 0.55 12.0 0.2 1 23 633 655 633 655 0.97

10 27 0.01 0.86 11.4 5.6 2 23 667 688 666 688 0.96

11 27 0.055 4.6 9.1 1.8 2 23 700 721 699 721 0.96

12 27 0.005 0.42 12.4 1.0 1 23 731 753 731 753 0.98

13 27 0.012 0.96 11.3 7.2 1 23 781 803 781 803 0.97

14 27 0.017 1.4 10.7 4.3 1 23 814 836 814 836 0.98

15 27 1.6e-05 0.0014 20.2 0.8 1 23 844 866 844 866 0.97

16 27 0.00087 0.072 14.8 0.1 2 23 886 908 885 908 0.97

17 27 0.024 2 10.3 3.2 1 23 926 948 926 948 0.96

18 27 0.15 12 7.8 3.3 1 23 955 977 955 977 0.97

19 27 0.00075 0.063 15.0 2.4 1 23 987 1010 987 1010 0.96

20 27 0.0048 0.4 12.5 0.3 1 23 1032 1054 1032 1054 0.97

21 27 0.014 1.2 11.0 0.1 2 23 1135 1156 1134 1156 0.94

22 27 2.1 1.7e+02 4.2 4.5 5 23 1166 1184 1163 1184 0.94

23 27 0.78 65 5.5 0.8 2 23 1195 1217 1194 1217 0.95

24 27 0.067 5.6 8.9 1.8 2 23 1234 1252 1234 1252 0.89

25 27 0.16 13 7.7 1.8 2 21 1256 1275 1256 1276 0.94

26 27 1.6 1.4e+02 4.5 2.6 2 23 1325 1346 1324 1346 0.93

27 27 0.0012 0.098 14.4 0.3 2 23 1357 1379 1356 1379 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	2.6e-05	0.0022	19.6	0.2	1	23	120	142	120	142	0.98
2	27	0.0014	0.12	14.1	0.6	2	22	177	197	176	197	0.93
3	27	2.3e-05	0.0019	19.8	0.5	3	23	235	256	233	256	0.96
4	27	0.00022	0.019	16.7	1.0	1	23	307	330	307	330	0.95
5	27	0.38	32	6.5	0.1	1	23	354	376	354	376	0.95
6	27	3.2e-05	0.0027	19.3	3.1	2	23	409	430	408	430	0.97
7	27	0.0022	0.18	13.6	3.7	2	23	482	504	482	504	0.97
8	27	0.0012	0.1	14.4	1.1	1	23	554	577	554	577	0.97
9	27	0.0066	0.55	12.0	0.2	1	23	633	655	633	655	0.97
10	27	0.01	0.86	11.4	5.6	2	23	667	688	666	688	0.96
11	27	0.055	4.6	9.1	1.8	2	23	700	721	699	721	0.96
12	27	0.005	0.42	12.4	1.0	1	23	731	753	731	753	0.98
13	27	0.012	0.96	11.3	7.2	1	23	781	803	781	803	0.97
14	27	0.017	1.4	10.7	4.3	1	23	814	836	814	836	0.98
15	27	1.6e-05	0.0014	20.2	0.8	1	23	844	866	844	866	0.97
16	27	0.00087	0.072	14.8	0.1	2	23	886	908	885	908	0.97
17	27	0.024	2	10.3	3.2	1	23	926	948	926	948	0.96
18	27	0.15	12	7.8	3.3	1	23	955	977	955	977	0.97
19	27	0.00075	0.063	15.0	2.4	1	23	987	1010	987	1010	0.96
20	27	0.0048	0.4	12.5	0.3	1	23	1032	1054	1032	1054	0.97
21	27	0.014	1.2	11.0	0.1	2	23	1135	1156	1134	1156	0.94
22	27	2.1	1.7e+02	4.2	4.5	5	23	1166	1184	1163	1184	0.94
23	27	0.78	65	5.5	0.8	2	23	1195	1217	1194	1217	0.95
24	27	0.067	5.6	8.9	1.8	2	23	1234	1252	1234	1252	0.89
25	27	0.16	13	7.7	1.8	2	21	1256	1275	1256	1276	0.94
26	27	1.6	1.4e+02	4.5	2.6	2	23	1325	1346	1324	1346	0.93
27	27	0.0012	0.098	14.4	0.3	2	23	1357	1379	1356	1379	0.95

Sequence Information

Coding Sequence: ATGTTTCCAGGGTCGAGTTCCACACCGGTGCCACCCAACAGGACCAGTAGTGATTCCGTTTCCTCCATCCAAACTGAAGCTACTAACCAAACAAAACCGTCGCAAGCCTCTGAGCTGGACTCTACTAAAAGGAATAGTCGGAAACGTAGTCATGAAAGTCTGGAAATGGCTTCTGCCAGCAGTAAATCTAACGAATTTCGGCCCACCAATTCAAAACGCGTCGAAGAACTGAAGAGTAGTAACAAGAGGCCTAGGCTAACGGCTAGCAATTATTATATGGATTCAGATTACGAAGACAACAGCGCTTCTCAATTCTCAGGCGAGACGGACTCTGACGAGCCCCTACTGAGAGACGACTTCAAGTGTAAAGTTTGCGGCCGACAGTTCCCCTCGGCAAAAAGCTTAGCCGCGCATTCCAGGATTCATTCAGGCAAAACGAACAAGGCAAAAGATACTTTCCCTGAAAATGTAGTAGTTACTATTCCAAAGAAGAATATCCAGGATGCGACTGATGTAGAAGACAAAATTAGCTGCGATAAATGCGAAAAgactttcaaattaaaaataatgctgAAACGTCACCAGGAGACATGCGGAAAGTCACCGCAAAAGACTCCACCCAATACACCGCCCAAGCCAATCCAAAAAGAGCTGTTAATATCGCTGGAACCCATAGACGGTATTCACGTGAAAAGAATAAATTGTAGCATGTGTACAACTACTTTCAAAACTATAGAGAACCTGGAAAAGCACATGAGAGTTGTGCACGCGGCCGTGCTGCCACAAATTAAATCGGAGCCCAAAACGAGCAACGGGAAGGTCTCCGTGCCTTGTATTTACTGTAAAAAACCATTCGACGACTACTATGTACACAGTGAACATTTCAGTAAATGCCCTGAAAGTACTAATGCTACCACATTTTCGTGCCCCGTTTGCAAAAAGGTTACATCAAAAAAGTCGGCATATTTCAAGCACATTAAGGACGTTCACTTCGAGCCGCGGATGTGGGCGCTGAAGCCGGACCAGCTGGAGCAGGAGCAGGCGGCGTCGCAGGAGCTGTTCGAGTGCCGCATGTGCTACAAGCAGCTGGCCACGGAGCAGCTGCTCATCACGCACCTGGCCGCGCACGTGTCTAATATCGAGGAGGCCGGTGACGAGTCCAGGCCAAgcacaatcgaagattcatcgTCAATAGTGTCTGACAACAGTGGCGGCGGCCCCCAGAAGTGTAAATACTGCGATAAAAGTTTCAAGTACAAGAAATCGTTAGCGAACCACGAGATGAAACATTTTGAACTTGAAAAAACAGAGCACAGCCAGAAGCAAGAAAAGTCTATGAATGAAGACACAGAAATAGAGGCAGAAGCTAAGGCGTCGAGCAGCCTACTCAACGAGTCGTACCGCGAGGAGTCCGAGTCCAGCCAGGAGGAGGGCGACGGTAACACGTGCGACATCTGCGAGAAGCAGTTCTCGTACCGGCGCCTGCTCGTGCACCACAAGCGCACCAAGCACAACATGAGCTCCGGCACCAAGCGCGCCAGCGTTGTGCTTAAGAACTGCCTAGTACGCTGTCTCATCTGCGACCTTGAGATGAGCGTCGGCGCGCTCAACGACCACAACAAGAAGCACATCCAGCAAAACATGAAGCCGCGCAACCTCTACACGTGCACCGACTGCGGCGACAAGTTCAAGAGCTGCAACGCTCTGGCGAACCACATCAAGCTGGTGCACAGGCTGAAGAAACTGCCGCCGAAACAGTTTGAAGGCGCCGACTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCGCTGGACGAGATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGGAGGGACAGGAGGGCGAGCCTTTGGTCAATCTTAGCGGATTTAACTGTACTATCTGCGGGAAGAACATGCCCACTCTAATTTCTCTGAAGCGACATGTCAATTGGCATTCAAATGTTGGGAACAATTTGGAAAAAAAGCTAGAATGCTTTGTTTGCAACGAGaCTTTCCGATTTCAATGCCACTACAAACTACATATGCGCGAGCACTATCGTGACACCAACCTCGATCCCAAACTGCTCACTTGTACCATCTGCAATCGAAAAAGCAAACACTTGAGGGCGGCTCAGGCGCATATGAACTATCACAAACAAACACGATTTAAGAATAAAGACTACCAGTGTTCCATATGCAAACGCGTCTTTCAGTACCGGAAGGTGTATCTTTCTCATATGGCTATACACTACAAGCGTGGTGAAAGCCAGAACACGATAGTAGGTGATTTACCACCCACAACTGCCGATAAAGGCGTATTTGATGGCAGCCATACTTGCCTTCATTGTGGAAAAGTCTGTGATTCTGAGAACTCTTTGAAACATCACATGTCTTGGCACAAATCGAAGACTTTGCTTTTTGGTGCGCGACACGAATGCCCAATTTGCCACGTCATGTTCACTAATAAAAAAAGGCAGGAACTACATACACGGACACATTACGAAGACGATAACGGCCCATTCAAATGTACAATATGCGGCAAAGGTTACACAGATGAGGATTATTTCCGCAGGCACGTGAAAGGTCACAACTTCGATCACCAGTCTCACAAGGATAGAATAGCCCGACTTCGAAAGGATAAGGTGAAGTGTCCCATCTGCGTACGCTACTATCCCGACTGGGTGAAGCTGATCCGGCATCTGCGGCGCACGCACCCCGAGAGCAAGATGGTGAAGGAGGACCCGgacgcgccggcgccgcgcgtgTTCTCCTGCAAGCTGTGCGCCAAGACCTTCCGCGATGAGCGCCGCCTGCGCCACCACGAGGACTCGCATCTGCGCAAGCCCGAGTTCTTCAAGTGCAAATTCTGCGGCAAGAAAACTATTTCTCTCAAGAATCATAACGTGCACATTAAAGGACATCTCACTTCCAAACAAGTCGACAATCCATTTAAATGCCCTCAGTGCGATGAAACATTCATCAAAGGATATGATTTGCACCACCATTTGAGAGATGTGCACAAGATTAATGAAACGTGGATTGCCGATCGCAACGAGCAAACGCTAAACGGGCCATTGAAAGAATTTCAATGTTCGATATGCCTCAAAATACTCGCAAGTAAGGGTAACTATGAGAGGCACTTGGATTACCACAATTCGCTGAGATGCAACTACTGTTACGACTATTTTAGTTCGCTGAGGTTCCTGGAAGGACACTTGACGTTTAGTTGTGACAAAAAGAAGTTGGTTGGTGACACTGAAATATATCCGAggaaaattaaatgttatgtcTGTTACAAACCCTTCCATTTACAAGTGAAACTGGATTGCCATTTGCGCACAcagcatggtataaaagtatcTAAGGAGGCTTCAAAGAGCAAAAAAGATCTTGTTTGTGATTATTGCTTCAGAGTATTCGAAAACCTTGATGCTTTGACTGGACATAAAATTTACCATCGTACCGTTGGTTATTACGGATGTATATATTGCAAACGAAAATTTAACACTTTGACTCTTTACAGAAAACATAAGAACCACCACTTCGCTCAGCTAAATGTCGACAACCCCACTAAATGTGAACACTGCGACGACACTTTCGTCGCGTTCCGAGAAATGATTTACCACATGAGGGACGTGCACGGAGATGACAAGGAGTGGATCATAATGCCAAAGGAATCCATCGAGGAAACGTGTCCCATTTGCGGGAAGGTGTTCTTTAACCTGCACCGGCACCTCGACTACCACGAGGCGAACCGCTGCAAGAAGTGCGGCGAGTACTTCTACTCGCGCACCGACTTCGACAACCACCTGTGCGCCATCGAGAGCGACGACGAGGCGGCGGCGGGCGTGGACTTGGACATTCGCCCCAAGTACGAGGAGTGTCGTTTCTGCTTCAAGCCCATCACCCGAAAGAGTTCGAAGGCGAAGCACGACGTCATACACAAGGGTTCTGGCTCTATTTCCTGTAGGTTCTGTTCGCATAAATTTAAAACGATGGACGCTTTCAACATTCATGCGTTTTCTCACCGTAACCGCAAATACAGAAAAAATCCATTGAAATGTCGTAAATGTGGAGAGAAATTTATTCAATATGGACCCTTCATTAAGCACATGAGAGGGGTACATAAGTTCGTGCAAAAAATGCACTACCGGGCGACCGTCAAAGCGGAACCCTGCGTGGTATGCGGGGACGAATTTCCCAACCTGCACAATCACTACCGAGCGCATTTGCAGAACCAGTGCACCTCGTGTCTCAAGTATTTCACCTCCGCCAAAGTGTTCGCCGAACACGAGTGCGCTAAGGAGGACTCCGATCCTACCAAAGTGTTTACGTGTGACGCGAACTTGCCGCTCTTGATCAACACCTATATTCCAAAGGACGAACAGGACGAACAAAAATATTACGGTTACGGCGATGACGAAGAGGAAGAAGATAGCGAGGTGCGGCTGCAGGGCCACATTATAGACGAGGAAAGTCAGAATTCGAACGAGAATGAACACTTCCGGTTGCAGTGTCCCATCATATCGGACGTGCTGTCGCTGTACCAGACGCAGGACGAGGCGCAGGCGCCCGCGCGCGCCTCGTTAGACCCCGACCCCGAAGTCATCGACCTGTCCGACGACGACGTGGGCGTCGTCGACGACCAAGCCATGTGTCCCACCATTACCATTGATGACTAA
Protein Sequence: MFPGSSSTPVPPNRTSSDSVSSIQTEATNQTKPSQASELDSTKRNSRKRSHESLEMASASSKSNEFRPTNSKRVEELKSSNKRPRLTASNYYMDSDYEDNSASQFSGETDSDEPLLRDDFKCKVCGRQFPSAKSLAAHSRIHSGKTNKAKDTFPENVVVTIPKKNIQDATDVEDKISCDKCEKTFKLKIMLKRHQETCGKSPQKTPPNTPPKPIQKELLISLEPIDGIHVKRINCSMCTTTFKTIENLEKHMRVVHAAVLPQIKSEPKTSNGKVSVPCIYCKKPFDDYYVHSEHFSKCPESTNATTFSCPVCKKVTSKKSAYFKHIKDVHFEPRMWALKPDQLEQEQAASQELFECRMCYKQLATEQLLITHLAAHVSNIEEAGDESRPSTIEDSSSIVSDNSGGGPQKCKYCDKSFKYKKSLANHEMKHFELEKTEHSQKQEKSMNEDTEIEAEAKASSSLLNESYREESESSQEEGDGNTCDICEKQFSYRRLLVHHKRTKHNMSSGTKRASVVLKNCLVRCLICDLEMSVGALNDHNKKHIQQNMKPRNLYTCTDCGDKFKSCNALANHIKLVHRLKKLPPKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPEGQEGEPLVNLSGFNCTICGKNMPTLISLKRHVNWHSNVGNNLEKKLECFVCNETFRFQCHYKLHMREHYRDTNLDPKLLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDLPPTTADKGVFDGSHTCLHCGKVCDSENSLKHHMSWHKSKTLLFGARHECPICHVMFTNKKRQELHTRTHYEDDNGPFKCTICGKGYTDEDYFRRHVKGHNFDHQSHKDRIARLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKEDPDAPAPRVFSCKLCAKTFRDERRLRHHEDSHLRKPEFFKCKFCGKKTISLKNHNVHIKGHLTSKQVDNPFKCPQCDETFIKGYDLHHHLRDVHKINETWIADRNEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLVGDTEIYPRKIKCYVCYKPFHLQVKLDCHLRTQHGIKVSKEASKSKKDLVCDYCFRVFENLDALTGHKIYHRTVGYYGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDDTFVAFREMIYHMRDVHGDDKEWIIMPKESIEETCPICGKVFFNLHRHLDYHEANRCKKCGEYFYSRTDFDNHLCAIESDDEAAAGVDLDIRPKYEECRFCFKPITRKSSKAKHDVIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRNRKYRKNPLKCRKCGEKFIQYGPFIKHMRGVHKFVQKMHYRATVKAEPCVVCGDEFPNLHNHYRAHLQNQCTSCLKYFTSAKVFAEHECAKEDSDPTKVFTCDANLPLLINTYIPKDEQDEQKYYGYGDDEEEEDSEVRLQGHIIDEESQNSNENEHFRLQCPIISDVLSLYQTQDEAQAPARASLDPDPEVIDLSDDDVGVVDDQAMCPTITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00412737;
90% Identity: iTF_00409528;
80% Identity: -