Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419654.1:22251112-22263910[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 1.8e-05 0.00097 19.9 0.2 1 23 201 223 201 223 0.99

2 27 0.0006 0.032 15.1 1.1 2 21 258 277 257 278 0.92

3 27 1.2e-05 0.00066 20.5 0.8 3 23 316 337 314 337 0.96

4 27 0.00025 0.014 16.3 0.5 1 23 388 411 388 411 0.95

5 27 1.1 60 4.9 0.1 1 23 435 457 435 457 0.95

6 27 4e-05 0.0022 18.8 3.9 2 23 490 511 489 511 0.97

7 27 0.002 0.11 13.5 3.7 2 23 563 585 563 585 0.97

8 27 0.0012 0.067 14.1 1.0 1 23 635 658 635 658 0.97

9 27 0.0061 0.33 12.0 0.2 1 23 714 736 714 736 0.97

10 27 0.021 1.1 10.3 6.1 2 23 748 769 747 769 0.96

11 27 0.051 2.8 9.1 1.8 2 23 781 802 780 802 0.96

12 27 0.0047 0.25 12.3 1.0 1 23 812 834 812 834 0.98

13 27 0.011 0.58 11.2 7.2 1 23 862 884 862 884 0.97

14 27 0.016 0.86 10.7 4.3 1 23 895 917 895 917 0.98

15 27 1.5e-05 0.00082 20.2 0.8 1 23 925 947 925 947 0.97

16 27 0.00081 0.044 14.7 0.1 2 23 967 989 966 989 0.97

17 27 0.022 1.2 10.2 3.2 1 23 1007 1029 1007 1029 0.96

18 27 0.14 7.5 7.7 3.3 1 23 1036 1058 1036 1058 0.97

19 27 0.0052 0.28 12.2 2.5 1 23 1068 1091 1068 1091 0.96

20 27 0.0045 0.24 12.4 0.3 1 23 1113 1135 1113 1135 0.97

21 27 0.013 0.72 10.9 0.1 2 23 1216 1237 1215 1237 0.94

22 27 1.9 1e+02 4.1 4.5 5 23 1247 1265 1244 1265 0.94

23 27 0.02 1.1 10.4 0.8 2 23 1276 1298 1275 1298 0.95

24 27 0.0092 0.5 11.4 1.2 2 23 1315 1333 1315 1333 0.89

25 27 0.51 28 5.9 1.7 2 21 1337 1356 1337 1357 0.93

26 27 1.5 83 4.4 2.6 2 23 1406 1427 1405 1427 0.93

27 27 0.0011 0.059 14.3 0.3 2 23 1438 1460 1437 1460 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	1.8e-05	0.00097	19.9	0.2	1	23	201	223	201	223	0.99
2	27	0.0006	0.032	15.1	1.1	2	21	258	277	257	278	0.92
3	27	1.2e-05	0.00066	20.5	0.8	3	23	316	337	314	337	0.96
4	27	0.00025	0.014	16.3	0.5	1	23	388	411	388	411	0.95
5	27	1.1	60	4.9	0.1	1	23	435	457	435	457	0.95
6	27	4e-05	0.0022	18.8	3.9	2	23	490	511	489	511	0.97
7	27	0.002	0.11	13.5	3.7	2	23	563	585	563	585	0.97
8	27	0.0012	0.067	14.1	1.0	1	23	635	658	635	658	0.97
9	27	0.0061	0.33	12.0	0.2	1	23	714	736	714	736	0.97
10	27	0.021	1.1	10.3	6.1	2	23	748	769	747	769	0.96
11	27	0.051	2.8	9.1	1.8	2	23	781	802	780	802	0.96
12	27	0.0047	0.25	12.3	1.0	1	23	812	834	812	834	0.98
13	27	0.011	0.58	11.2	7.2	1	23	862	884	862	884	0.97
14	27	0.016	0.86	10.7	4.3	1	23	895	917	895	917	0.98
15	27	1.5e-05	0.00082	20.2	0.8	1	23	925	947	925	947	0.97
16	27	0.00081	0.044	14.7	0.1	2	23	967	989	966	989	0.97
17	27	0.022	1.2	10.2	3.2	1	23	1007	1029	1007	1029	0.96
18	27	0.14	7.5	7.7	3.3	1	23	1036	1058	1036	1058	0.97
19	27	0.0052	0.28	12.2	2.5	1	23	1068	1091	1068	1091	0.96
20	27	0.0045	0.24	12.4	0.3	1	23	1113	1135	1113	1135	0.97
21	27	0.013	0.72	10.9	0.1	2	23	1216	1237	1215	1237	0.94
22	27	1.9	1e+02	4.1	4.5	5	23	1247	1265	1244	1265	0.94
23	27	0.02	1.1	10.4	0.8	2	23	1276	1298	1275	1298	0.95
24	27	0.0092	0.5	11.4	1.2	2	23	1315	1333	1315	1333	0.89
25	27	0.51	28	5.9	1.7	2	21	1337	1356	1337	1357	0.93
26	27	1.5	83	4.4	2.6	2	23	1406	1427	1405	1427	0.93
27	27	0.0011	0.059	14.3	0.3	2	23	1438	1460	1437	1460	0.95

Sequence Information

Coding Sequence: ATGGCTCTCAAGCTGGGAAAATGTAGACTTTGTCTCAAACTCGGCGACTTCTATTCCATCTTTACGGTGGATAATAGTGTGCAGTTGGCGGATATGGTAATGGAGTGTGCTCGGATCAAAATATTTGAAGGAGATGGATTACCAGATAAAGTCTGTGCGGAATGCATTCAGAAACTCAGTAGTGCATATATTTTTAAACAACAGTGTGAAAGAGCTGATCAGGAGTTACGCCGAAATTATGTACCTCCTCCGGGTTCGAGTTCCACGCCGGTGCCGCCCAACAGGACCAGTCGTGACTCCGTTTCCTCCAGTCACACTGAGGCGACTAACCAAACAAAACCCTCGCAAGCCTCTGAGCTGGATTCTACTAAAAGAAATAGTCGGAAACGTAGTCATGAAAGTCTGGAAATCGCTTCTGCCAGTAGCAAATCGACCGAATTTCGACCCAGCGCTTCAAAACGCGTCGAGGAACTAAAAAGTAGTAACAAGAGGCCTAGGCTAACGGCTAGCAGTTATTACATGGATTCAGATTACGAAGACAACAGCGCTTCTCAATTCTCAGGCGAGACGGACTCTGACGAACCCCTACTGAGAGACGAATACAAGTGTAAAGTTTGCGGTCGACAGTTCCCGTCGGCGAAAAGCTTAGCTGCGCACTCCAGGATTCATTCAGGCAAAACGAACAAGGCAAAAGATACCTTTCCTGAAAATGTAGTCGTTACTATTCCAAAGAAGAATATCCAGGATGCGGCTGATGTAGAAGACAAAATTAGCTGCGATAAATGCGGAAAGACTTTCAAATTAAAAATAATGCTGAAACGTCACCACGAGACATGCGGAAAGTCACCGCAAAAGACTCCACCCAAGACACCGCCCAAGCCCATCCAGAAAGAGTTATTAATATCGCTCGAACCCATAGACGGTATTCACGCGAACAGAATTAATTGTAGCATGTGTACAACTACGTTCAAAACTACCGAGAACCTGGAAAAGCACATGAGAGTGGTGCATGCGGCCGTGCTGCCAAAAGTTAAATCGGAGCCCAAAGCGAGCAACGGGAAGGTCTCCGTGCCTTGTATTTACTGTAAAAAACCATTCGACGACTATTATGTACACAGTGAACATTTCAGTAAATGCCCAGAAAGTACTAATGCTACGACATTTTCGTGCCCCGTTTGCGAAAAGGTTACATCAAAAAAGTCAGCATACTTCAAACACATAAAGGACATTCACTTCGAGCCGCGGATGTGGGCGCTGAAGCCGGACCAGCAGGCGGCGGAGCAGGCGGCGCCGCGGGAGCTGTTCGAGTGCCGCATGTGCTACAAGCAGCTCGGCACCGAGCAGCTGCTCATCACGCACCTCGCCGCGCACGTGTCCAACATCGAGGAGGCCGGCGACGAGTCCAGGCCGAGCACAATTGAAGATTCGTCGTCAATAGTGTCTGACAACAGCGGCGGCGGCCCCCAGAAGTGTAAATACTGCGATAAAACTTTCAAGTACAAGAAATCGTTAATGAACCACGAGATGAAACATTTTGAACTTGAAAAAACAGAGCAAAGCCAGAAGCAAGAAAAGTGTATGAACGACGACACAGAAATAGAGGCAGAAGCTAACGCGTCTTGCAGCCTCGTGAAGGAGTCGTACCGCGAGGAGTCCGAGTCGAGTGGGGAGGAGGGCGACGGCAACACGTGCGACATATGCGAGAAGCAGTTCTCGTACCGTCGCCTGCTCGTGCACCACAAGCGCACCAAGCACAACATGAGCTCCGGCACCAAGCGCTCCAGCGTCGTGCTCAAGAACTGCCTGGTGCGCTGTCTCATCTGCGACCTGGAGATGAGCGTGGCCGCGCTCAACGACCACAACAAGAAGCACACCCAGCAGAACATGAAGCCGCGCAACCTCTACACCTGCTCCGACTGCGGCGACAAGTTCAAGAGCTGCAACGCTCTGGCGAACCACATCAAGCTGGTCCACAGGCTGAAGAGAATGCCGCCCAAGCAGTTTGAAGGCGCAGATTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCGCTGGACGAGATCCAGAGTCACAACGGCTTTGGGGAGGTTCCGGAGGAACAGGGAGGCGAACCCTTGGTCAATCTTAGCGGATTTAACTGTACTATCTGCGGAAAGAACATGCCCACTCTAATTTCTCTAAAGCGACATGTAAATTGGCATTCAAATGTTGGGAATAATTTGGAAAAAAAGCTAGAATGCTTTGTTTGCAAAGAGACTTTCCGATTTCAATGCCACTACAAACTACATATGCGCGAGCACTACCGTGACACCAACCTGGATCCCGCACTGCTCACTTGCACCATCTGCAATCGGAAAAGCAAACACTTGAGGGCGGCTCAGGCGCATATGAACTATCACAAACAAACGCGGTTCAAGAATAAAGACTACCAATGTTCCATATGCAAACGCGTCTTTCAGTACCGGAAGGTGTATCTTTCACACATGGCCATACACTACAAGCGCGGTGAAAGCCAGAACACGATAGTAGGTGATTTACCACCCACGACTGCCGATAAAGCCGTTTTCGATGGCACCCATACTTGCCTTCATTGCGGAAAAGTCTGTGATTCTGAGAATTCATTGAAACATCACATGTCTTGGCACAAATCGAAGACTTTGCTTTTTGGTGCGCGACACGAATGCCCAATTTGCCACGTCATGTTCACTAATAAAAAAAGGCAGGAACTACATACGCGGACACATTACGAAGACGATAACGGTCCATTTAAATGTACAATATGCGGCAAAGGTTACACAGATGAAGATTATTTCCGCAGGCACGTGAAAGGTCACAACTTCGATCACCAGTCTCACAAGGATAGGATAGCCCGACTTCGAAAGGACAAAGTGAAGTGTCCCATCTGCGTGCGCTACTATCCCGACTGGGTGAAGCTGATCCGGCACCTGCGGCGCACGCACCCCGAGAGCAAGATGGTGAAGCAGGACCCGGACGCGCCCGCGCCGCGCGTCTTCTCCTGCAAGCTGTGCGCCAAGACCTTCCGCGACGAGCGCCGCCTGCGCCACCACGAGGACTCGCATCTGCGCAAGCCCGAGTTCTTCAAGTGCAAGTTCTGCGGCAAGAAAACTATTTCGCTCAAGAATCATAATGTGCACATTAAAGGACATCTCACTTCCAAACAAGTCGACAATCCATTTAAATGCCCTCAGTGCGATGAAACATTCATTAAAGGATACGATATGCACCACCATTTGAGAGATGTGCACGACATTAATGAAACGTGGATTGCTGATCGCAACGAGCAAACGCTAAACGGGCCATTGAAAGAATTTCAATGCTCGATATGCCTCAAAATACTCGCAAGTAAGGGTAACTATGAGAGGCACTTGGATTACCACAATTCGCTGAGATGCAACTACTGTTACGACTACTTTAGTTCGTTGAGGTTCCTGGAAGGACACTTGACTTTTAGCTGTGACAAAAAGAAGTTGATTGGTGACACTGAAATATATCCGAGGAAAATTAAATGTTACGTCTGTTACAAACCCTTCCATTTACAAGTGAAACTGGATTGCCATTTGCGCACACAGCACGGTATAAAAGTGTCTAAGGAGGCTTCAAAGAGCAAAAAAGATCTTGTTTGTGATTATTGCTTCAGAGTATTCGAAAACCTTGACGCTTTGACTGGACATAAAATTTATCATCGTACGATTGGTTATTACGGATGCATATATTGCAAACGAAAATTCAACACTTTGACTCTTTACAGAAAACATAAGAACCATCACTTCGCTCAGCTAAATGTCGATAACCCCACCAAATGCGAACACTGCGACGAGACTTTCGTCGCGTTTCGAGAAATGATTTACCACATGAGAGACGTGCACGGAGATGACAAGGAGTGGATCATAATGCCAAAGGAATCCATCGAGGAATCGTGCCCCATCTGCGGTAAGGTGTTCTCCAACCTGCACCGGCACCTCGACTACCACGAGGCGAACCGCTGCAGGAAGTGCGGCGAGTACTTCTACTCGCGCACCGACTTCGACAACCACCTGTGCGCCATCGAGAGCGACGACGAGGCGGCGGCGGGCGCGGACCTGGACGTGCGCCCCAAGTACGAGGAGTGCCGCTTCTGCTTCAAGCCCATCACCCGAAAGAGTTCCAAGGCGAAGCACGACGGCATACACAAGGGTTCTGGCTCTATTTCCTGTAGGTTCTGTTCACATAAATTTAAAACGATGGACGCTTTTAACATTCATGCGTTTTCTCATCGCAACCGCAAATACAGAAAAAATCCATTGAAATGTCGTAAATGTGGAGAGAAATTTATTCAGTATGGACCCTTCATAAAGCACATGAGAGGGGTGCATAAGTTCGTGCAAAAAATGCACTACCGAGCGACCGTCAAAGCGGAACCCTGCGTGGTGTGCGGAGACGAGTTCCCCAACCTGCACAATCACTACCGTGCGCATTTGCAGAACCAGTGCACCTCGTGTCTCAAGTATTTCACATCCGCCAAAGTGTTCGCCGAACACGAGTGCGGCAAGGAGGACTCCGATCCTACCAAAGTGTTTACGTGCGAGGCGAACTTGCCGCTCCTGATCAACACCTATGTTCCGAAGGACGAACAGGACGAGCAAAAATATTACGGTTACGGCGACGAGGAGGAAGAGGAATATAGTGGGGTGCGGCTGCAGGGCCACATGATGGACGAGGAAAGTCAGAATTCGAACGAGAACGAACACTTCCGGTTGCAGTGTCCCATCATTTCGGACGTGCTGTCGCTGTACCAGACGCAGGACGAGGCGCAGGCGCCGGCGCCGGCGCGCGCGGCTCCCGACTCCGACCCCGACGTCATCGACCTGTCCGACGACGATGTGGGCGTCGTCGACGACCAAGCCACGTGTCCCACCATTACCATTGACGATTAA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNSVQLADMVMECARIKIFEGDGLPDKVCAECIQKLSSAYIFKQQCERADQELRRNYVPPPGSSSTPVPPNRTSRDSVSSSHTEATNQTKPSQASELDSTKRNSRKRSHESLEIASASSKSTEFRPSASKRVEELKSSNKRPRLTASSYYMDSDYEDNSASQFSGETDSDEPLLRDEYKCKVCGRQFPSAKSLAAHSRIHSGKTNKAKDTFPENVVVTIPKKNIQDAADVEDKISCDKCGKTFKLKIMLKRHHETCGKSPQKTPPKTPPKPIQKELLISLEPIDGIHANRINCSMCTTTFKTTENLEKHMRVVHAAVLPKVKSEPKASNGKVSVPCIYCKKPFDDYYVHSEHFSKCPESTNATTFSCPVCEKVTSKKSAYFKHIKDIHFEPRMWALKPDQQAAEQAAPRELFECRMCYKQLGTEQLLITHLAAHVSNIEEAGDESRPSTIEDSSSIVSDNSGGGPQKCKYCDKTFKYKKSLMNHEMKHFELEKTEQSQKQEKCMNDDTEIEAEANASCSLVKESYREESESSGEEGDGNTCDICEKQFSYRRLLVHHKRTKHNMSSGTKRSSVVLKNCLVRCLICDLEMSVAALNDHNKKHTQQNMKPRNLYTCSDCGDKFKSCNALANHIKLVHRLKRMPPKQFEGADLADFCEVVVTKAEPLDEIQSHNGFGEVPEEQGGEPLVNLSGFNCTICGKNMPTLISLKRHVNWHSNVGNNLEKKLECFVCKETFRFQCHYKLHMREHYRDTNLDPALLTCTICNRKSKHLRAAQAHMNYHKQTRFKNKDYQCSICKRVFQYRKVYLSHMAIHYKRGESQNTIVGDLPPTTADKAVFDGTHTCLHCGKVCDSENSLKHHMSWHKSKTLLFGARHECPICHVMFTNKKRQELHTRTHYEDDNGPFKCTICGKGYTDEDYFRRHVKGHNFDHQSHKDRIARLRKDKVKCPICVRYYPDWVKLIRHLRRTHPESKMVKQDPDAPAPRVFSCKLCAKTFRDERRLRHHEDSHLRKPEFFKCKFCGKKTISLKNHNVHIKGHLTSKQVDNPFKCPQCDETFIKGYDMHHHLRDVHDINETWIADRNEQTLNGPLKEFQCSICLKILASKGNYERHLDYHNSLRCNYCYDYFSSLRFLEGHLTFSCDKKKLIGDTEIYPRKIKCYVCYKPFHLQVKLDCHLRTQHGIKVSKEASKSKKDLVCDYCFRVFENLDALTGHKIYHRTIGYYGCIYCKRKFNTLTLYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWIIMPKESIEESCPICGKVFSNLHRHLDYHEANRCRKCGEYFYSRTDFDNHLCAIESDDEAAAGADLDVRPKYEECRFCFKPITRKSSKAKHDGIHKGSGSISCRFCSHKFKTMDAFNIHAFSHRNRKYRKNPLKCRKCGEKFIQYGPFIKHMRGVHKFVQKMHYRATVKAEPCVVCGDEFPNLHNHYRAHLQNQCTSCLKYFTSAKVFAEHECGKEDSDPTKVFTCEANLPLLINTYVPKDEQDEQKYYGYGDEEEEEYSGVRLQGHMMDEESQNSNENEHFRLQCPIISDVLSLYQTQDEAQAPAPARAAPDSDPDVIDLSDDDVGVVDDQATCPTITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00412737;
90% Identity: iTF_00411706; iTF_00871563;
80% Identity: -