Casp036784.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958507055.1
- Location
- OY293830.1:36912551-36924882[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-114 6.7e-110 368.7 20.5 1 300 55 352 55 352 0.94 2 2 0.048 2.6e+03 -1.0 3.1 7 232 384 420 353 427 0.44
Sequence Information
- Coding Sequence
- ATGGTCGTTATCAATAACGGTGTCTCAATGTATGATGGTCAATACAAATTCGATCGGCTAGCTCGCCTGATTCGATGCCCCTCGCTCGAGGACTGCCTTGAAGGGAAGCCCCATAATGTGGATGTGTTGTTTGTAACAGCTGTTTCGGcttgtaaaaaaaatGCCGAGGCTAGATTATGGGCTAAACGACAAGCTCGCGCTGAAGCCAGAGAAATTCGTATGCGGGAGCTGGAGAGGCAGCAGAAGGAGCAAGAAGAAAATGCTGATCGACAGTTTGATATGTTGGCATCTTCTGGAGGAGGCATCCTGCCAGAGCCACCAGCTATTGTCCGAACACCACGCTCGACAGCGTCAAGGTATCTGTCGAGCCGAAGAAGCTCTGAAGATTCCTTGGAAGATGGTGGCGCCGGAGGCAGTCTCAGGGAACTAAggCATGAACTCAAAGAGCTTGAGGAGAAATTCCGCAAGGCGATGATAGCTAACGCTCAGTTGGATAATGACAAAATGGCACAGACGTATCAGTTGGAGTTGTTGAAGGACAGgttaGAAGAACTCGAAGAGGAACATTCACAGCTGAAACGTGAGCACCGCGACAAATGTCGAGAACATGATCAACTGAAAAGGTTGTGCGCATCCCTTCGTGACGACCTTGCTGTAGTGAAACATGAACTGGAAGAAAGGGATCACCTTATAGCCGACAAAGGTCTTGTCATAGTGAGAGAGGAGGTACCACCAGATGAAGATGGAAATCTGAGGCCTCCCAAAAAGGCATTGGTTAGTGCAGAGAATGCGAGGTTACTTGAAAGTGCAGGTGATGGAAGTTTAGATGTACGGTTGGCAAAGTTTGCTACAGAGAAAAGTGAGTTGCAAGATCAAATCAGCCATTTAAAATTAGAATTAGAAGAAGAGAAAAGCAAGAGACGGAAACCTGGTTCGATAGGACATTTAAATGGGCCATCATCTGAATACGACTATGATGACCTTCAAAGAGAAGCAAGTAAACAATTGTCAGACTACAAATTCAGGGCACAGAAGGCTGAGCAAGATGTTGCGACGTTGCAGGCAACAGTTGCCCGTTTAGAAAGTCAAGTAATTAGATATAAAACGGCTGCTGAAGTTTCGGAGCAGTCTGAGGAGGCACTAAAAGCCGAAAAGAGAAAGTTGCAACGAGAGgccCGAGACGCTTTAAGTCGAGCTGAAGAACTGGAAACGTCCAATACACATTTACTGAAACGTTTGGATAAACTTAAGAATGCAAAATCCGCGTTATTGAAAGAACTTTGA
- Protein Sequence
- MVVINNGVSMYDGQYKFDRLARLIRCPSLEDCLEGKPHNVDVLFVTAVSACKKNAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLASSGGGILPEPPAIVRTPRSTASRYLSSRRSSEDSLEDGGAGGSLRELRHELKELEEKFRKAMIANAQLDNDKMAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHDQLKRLCASLRDDLAVVKHELEERDHLIADKGLVIVREEVPPDEDGNLRPPKKALVSAENARLLESAGDGSLDVRLAKFATEKSELQDQISHLKLELEEEKSKRRKPGSIGHLNGPSSEYDYDDLQREASKQLSDYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01289990; iTF_01369409; iTF_00886021; iTF_00328104; iTF_01047276; iTF_01310522; iTF_00395304; iTF_00910745; iTF_00735562;
- 90% Identity
- -
- 80% Identity
- -