Ntra044725.2
Basic Information
- Insect
- Neocrepidodera transversa
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963243735.1
- Location
- OY725355.1:3041493-3057679[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-113 9e-109 364.9 25.0 1 300 28 317 28 317 0.96 2 2 0.13 3.5e+03 -1.5 4.3 143 173 338 365 315 392 0.44
Sequence Information
- Coding Sequence
- ATGGATGGCGTTGGGGGCCGTAGGCGTCTTGCTACCAAATCAGCAGCCGAGGATCAGGCTCTTGACCAAATTGCTAAAGAAgcaGAAGCGCGACTATGGGCGAAGAGACAAGCGCGTGCCGAGGCGAGAGAGATAAGAATGCGCGAATTAGAACGTCAACAAAAGGAACAAGAAGAAAACGCCGACAGACAATTCGACATGTTAGCCTCCGGCGAACCTACGTCACTGGTCAGAACGCCCAGGAGCGCCGCCACCACTCGTTACCTATCGAGCAGAAGGAGTTCGGAGGATTCTTTAGAAGATGGAGGAAGTCTTCGAGAATTAagaCACGAGTTAAAAGAAGTCGAGGACAAATTTAGGAAAGCTATGATAGCTAATGCTCAATTGGATAATGATAAATCGGCGCAAACGTATCAATTGGAGTTATTAAAAGATAGACTGGAAGAATTGGAAGAGGAACACTCCCAATTAAAACGCGAACACAGAGACAAATGCAGAGAGCACCAAACCTTAAAAAGCATCTGTTCTAAATTAAAAGACGACATGGCGTTTGCCAAATACGAACTCGAAGAAAGAGATCGACTCATAGCCGAAAAAGGCCTCGTCATAGTAGGAGAAGAAGTACCACCGGACGAAGACGGTACTCAACATCCCCCGAAAAAAGCATTGGTCAGCATCGAAAATGCTCATTTGCTCGAAACCGCCGGTGATGGTAGCTTGGACGTTCGGTTAACGCGATTCCTCAAAGAAAAAACCGAACTACAGGATCAAATTAGCCATTTAAAACTAGAATTAGAAGAAGAGAAGAATAAGAGGAGGAAACCGAGTTCGAGTGGAACTTTGAATGGACCGTCTTCAGATTATGATTATGACGACATTCAAAGAGAGGCAAGTAAACAGTTGGCCGATTGGAAGTTTCGAGCTCAAAAAGCCGAACAAGATACGGCAACGCTGCAAGCGACTGTTGCGCGACTCGAAAGTCAAGTTATACGGTATAAAACCGCTTCAGAAATTTCCGAACAGTCCGAAGAAGCCTTAAAGGCGGAAAAAAGGAAACTTCAGAGAGAagctAGAGACGCATTAAATCGGGCAGAAGAATTAGAAACATCAAATACACACTTACTCAAGAGactagataaattaaaaaacgccAAATCGGCGCTATTAAAAGAACTTTGA
- Protein Sequence
- MDGVGGRRRLATKSAAEDQALDQIAKEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLASGEPTSLVRTPRSAATTRYLSSRRSSEDSLEDGGSLRELRHELKEVEDKFRKAMIANAQLDNDKSAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHQTLKSICSKLKDDMAFAKYELEERDRLIAEKGLVIVGEEVPPDEDGTQHPPKKALVSIENAHLLETAGDGSLDVRLTRFLKEKTELQDQISHLKLELEEEKNKRRKPSSSGTLNGPSSDYDYDDIQREASKQLADWKFRAQKAEQDTATLQATVARLESQVIRYKTASEISEQSEEALKAEKRKLQREARDALNRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388236;
- 90% Identity
- iTF_00387242; iTF_00458923; iTF_00056588;
- 80% Identity
- -