Lcap012553.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949126875.1
- Location
- OX421398.1:13690156-13708744[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-112 1.1e-107 361.5 21.9 1 300 65 352 65 352 0.96 2 2 0.017 9.6e+02 0.5 0.3 120 162 350 392 350 402 0.74
Sequence Information
- Coding Sequence
- ATGAGTGAAGAAATAATCACAGAAATGCTTGAAAACGTTGATAATAACAACGTGTTGTCGATTAAAGGAGTTACTATGACAGAAACATCGGATTATACGGAGAACATTAGTGATTCTACTGTTGACAATAATAAAACTAATCAAAGTGATGGTGGTGTAATTGATTCTTTTATGCAATGTACTAGCGGAGAGgCTGAAGCGAGGCTATGGGCAAAGAGACAAGCCAGAGCAGAGGCGAGAGATATACGCATGCGCGAATTAGAAAGACAACAAAAGGAACAAGAAGAAAACGCCGACAGACAATTCGATATGTTAGCGTCAGAACCAACTTCGTTAGTGAGAACACCGAGAAGTGCCGGAACTCGATATTTATCCAGTCGAAGAAGTTCCGAAGACTCTCTGGAAGATGGTGGAAGTTTAAGGGATTTAAGGCACGAATTGAAAGAAGTCGAAGAGAAATTCCGAAAAGCGATGATAGCCAATGCGCAGTTGGATAACGACAAAACTGCCCAGACTTACCAATTGGATCTATTGAAAGATAGacTAGAAGAATTAGAGGAAGACCATTCCCAATTAAAGAGGAAACACCGAGATAAGTGTCGTGAACACCAAACGTTAAAAAGTATTTGCACCAAATTAGAAGATGACTTAGCATTGACGAGGTTTGAACTTGGGGAACGAGATCGACTGATATCTGAAAAGGGATTAGTGATAGTAGGCGAAGAAATCCCACCGGATGAAAATGGCACGCAACATCCGCCGAAGAAAGCACTAGTTAGTGTGGAAAATGCTCATTTGTTGGAAAATGCTGGTGACGGAAGTTTAGATGTGCGATTATCTCGGTTTCTTAAAGAAAAAATCGAACTTCAGGATCAAATTAGCcatttaaaactagaattagaagaagaaaaaaataagagaaggaAACCGAGCTCGAGTGGAATTTTGAACGGACCGTCTTCTGATTATGACTACGACGACATTCAAAGAGAAGCGAGCAAACAGTTGTCAGATTGGAAATTTAGAGCCCAAAAAGCGGAACAGGATGTAGCGACACTGCAAGCGACGGTGGCGAGGTTAGAAAGTCAAGTCATTAGGTATAAAACAGCTTCTGAAATTTCGGAGCAATCTGAAGAGGCTCTCAAAGCTGAGAAACGGAAGCTTCAACGAGAGgATTCAGATTCATTAACAGATTTATCAACTGATGTTTCAGAAAGCATTTAA
- Protein Sequence
- MSEEIITEMLENVDNNNVLSIKGVTMTETSDYTENISDSTVDNNKTNQSDGGVIDSFMQCTSGEAEARLWAKRQARAEARDIRMRELERQQKEQEENADRQFDMLASEPTSLVRTPRSAGTRYLSSRRSSEDSLEDGGSLRDLRHELKEVEEKFRKAMIANAQLDNDKTAQTYQLDLLKDRLEELEEDHSQLKRKHRDKCREHQTLKSICTKLEDDLALTRFELGERDRLISEKGLVIVGEEIPPDENGTQHPPKKALVSVENAHLLENAGDGSLDVRLSRFLKEKIELQDQISHLKLELEEEKNKRRKPSSSGILNGPSSDYDYDDIQREASKQLSDWKFRAQKAEQDVATLQATVARLESQVIRYKTASEISEQSEEALKAEKRKLQREDSDSLTDLSTDVSESI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388236;
- 90% Identity
- iTF_00735562; iTF_00026047;
- 80% Identity
- -