Rmor036098.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963680705.1
- Location
- OY796661.1:6699387-6707472[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-115 1.7e-110 370.9 29.9 1 300 82 367 82 367 0.97 2 2 0.065 4.3e+03 -1.5 3.2 6 225 398 428 368 442 0.44
Sequence Information
- Coding Sequence
- ATGACAGAGACTGAAGGTGTTTGTGCCGAACTTGAGACTAACGTCGCgctaaatgataaaaaaaacgAACCGAATAATAATGTGCTCGTCTTGAAAGGTGTAACGGACTCTGAAACCTCGGATTTTTTGGAAGAAAGCGGCAATTTTTGCGATTACAGTGGTGAAAACGGCAAGGATATTTCCGACGACGTTCTAGATGAAAGTGATGTGATTCATTCCTATATACAGAACACCAACGATGAAGCCGAAGCGAGACTTTGGGCCAAGCGACAGGCGAGAGCAGAGGCGAGGGAAATACGTATGCGCGAACTGGAACGTCAACAGAAAGAACAAGAGGAGAATGCAGACAGGCAATTTGATATGGCCGAGCCTATGGTCAGAACAGCCAGGACAGCCACTGCCGGCAGTCGGTATTTGTCCAGTCGGAGAAGTTCTGAAGATTCCCTGGAAGATGGGGGCAGCCTTAGGGAAATACGACATGAACTCAAGGAGGTTGAAGAAAAATTCCGAAAGGCAATGATTGCCAATGCTCAGCTTGACAATGACAAAGCGGCGCAAACGTATCAGTTAGAGTTATTAAAAGATAGATTAGAAGAATTAGAAGAGGAACATTCGCAACTAAAAAGGGAACACCGAGAAAAATGCAGAGAGCACGACCAGCTCAAGAGGCTCTGCACCAAACTGAAAGATGACCTGGCTGTGACAAGAGCTGAGCTCGAGGAAAGGGACCGATTGATCACAGAGAAAGGATTAGTTATTGTAGGCGAAGAGGTGCCCCCTGACGAAGATGGCACGATACAGCCGCCCAAGAAAGCCCTTGTTAGTGTAGAAAATGCCCAGCTGCTGGAAAGTGCAGGCGATGGAAGTCTTGatGTTCGGCTGGCAAGGTTTGCAAAGGAAAAAAGCGAACTACAGGATCAAATTAGCcatttaaaattagaattagaGGAAGAAAAAAGTAAAAGGCGGAAGCCCAGTTCGACTGGTCTTCTCAATGGCCCATCATCTGAATATGACTATGATGATATCCAAAGGGAAGCAAGTAAACAGCTTGCAGACTACAAATTTCGAGCCCAAAAATCTGAACAAGACGTCGCAACGTTACAAGCAGCAGTCGCAAGGTTAGAAAGTCAAGTCATACGGTATAAAACAGCAGCAGAAGTATCGGAACAGTCGGAAGAGGCGCTGAAAGccgaaaaaagaaaattacaaagAGAGGCTAGAGATGCACTAAGCAGAGCAGAAGAGCTGGAGACATCAAACACCCATCTACTGAAAAGATTAGACAAGTTAAAAACCGCAAAATCGGCGTTGCTAAAAGAACTTTGA
- Protein Sequence
- MTETEGVCAELETNVALNDKKNEPNNNVLVLKGVTDSETSDFLEESGNFCDYSGENGKDISDDVLDESDVIHSYIQNTNDEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMAEPMVRTARTATAGSRYLSSRRSSEDSLEDGGSLREIRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHREKCREHDQLKRLCTKLKDDLAVTRAELEERDRLITEKGLVIVGEEVPPDEDGTIQPPKKALVSVENAQLLESAGDGSLDVRLARFAKEKSELQDQISHLKLELEEEKSKRRKPSSTGLLNGPSSEYDYDDIQREASKQLADYKFRAQKSEQDVATLQAAVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKTAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388236;
- 90% Identity
- iTF_01369409; iTF_00886021;
- 80% Identity
- -