Came042082.1
Basic Information
- Insect
- Chrysolina americana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958502065.1
- Location
- OY293416.1:40727952-40758740[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-113 3.8e-108 363.3 26.6 1 300 78 365 78 365 0.96 2 2 0.048 3.5e+03 -1.0 3.0 194 232 398 433 366 440 0.42
Sequence Information
- Coding Sequence
- ATGACGGAGTTCGCAGTCAGTGCTGCTTTAGAAGAAATCAGTGCgataaaagaagaaaataataacgTGTTGGTAGTGAAGGGTGTGACAGAGACTGACACGTCAGATTTTGTAGAAATTAGTTCTGATTTCGGCAGTGCTACGAATGATAAAAACAATGGCCCTGACGAAGAGGAATACTTCGATAACAGCGATGTGATTCACTCCTTCATTCAAAATACTACCGATGAAGCCGAAGCTCGGCTTTGGGCGAAGCGCCAAGCCAGGGCGGAGGCGAGGGAGATACGAATGCGAGAACTGGAACGGCAACAGAAGGAGCAGGAAGAAAACGCTGACAGACAGTTCGACATGTTGGCGGAACCGGTAGCTGTGGTGAGGACGCCGAGGAGCTCCGCGGGTAGCAGATATCTATCAAGCCGGAGGAGCTCAGAGGATTCCTTGGAAGACGGGGGTAGTCTTAGGGAAATGAGGCATGAACTGAAAGAAGTTGAAGATAAGTTTCGAAAAGCCATGATTGCCAACGCTCAGATGGACAATGATAAAACGGCGCAGACGTACCAGTTGGAATTGTTAAAGGATAGGTTAGAGGAGTTGGAAGAGGagtactcacagctgaagagaGAACACAGAGATAAATGCAGAGAACATGACCAGTTAAAAAGGCTATGTGTAAAACTAAAAGATGATTTGGCTGTGACAAAATATGAACTAGAAGAGAGAGATCGACTCATTTCTGAAAAAGGTTTAGTGATAGTAGGCGAAGAAGTACCACCTGATGAGGATGGTACTATACACCCCCTCAAAAAAGCTCTTGTTAGCGCAGAAAATGCCCAATTATTGGAAAGTGCAGGTGACGGAAGTTTAGaTGTTCGGTTGGCTAGGTTTGCGAAGGAGAAGATCGAATTACAGGACCAAATTAGCCATTTAAAATTAGAATTAGAAGAGGAAAAAAGCCGAAGAAGGAAACCAAGTTCGACTGGTCTTCTGAACGGGCCATCTTCTGACTATGATTATGATGATATACAAAGGGAAGCAAGTAAACAGCTGGCCGACTACAAATTTAGAGCCCAAAAGGCTGAGCAAGATGTAGCAACATTACAAGCAACAGTAGCacgtctcgaaagtcaagtgaTAAGGTATAAGACAGCCGCAGAAGTATCAGAACAATCCGAGGAAGCGCTCAAATccgaaaaaagaaaattacaaagagaGgcaAGGGATGCCCTCAGCAGAGCAGAAGAACTAGAAACATCAAATACACATTTACTCAAAAGATTAGACAagttgaaaaatgcaaaatctgcTTTGTTGAAAGAACTGTGA
- Protein Sequence
- MTEFAVSAALEEISAIKEENNNVLVVKGVTETDTSDFVEISSDFGSATNDKNNGPDEEEYFDNSDVIHSFIQNTTDEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPVAVVRTPRSSAGSRYLSSRRSSEDSLEDGGSLREMRHELKEVEDKFRKAMIANAQMDNDKTAQTYQLELLKDRLEELEEEYSQLKREHRDKCREHDQLKRLCVKLKDDLAVTKYELEERDRLISEKGLVIVGEEVPPDEDGTIHPLKKALVSAENAQLLESAGDGSLDVRLARFAKEKIELQDQISHLKLELEEEKSRRRKPSSTGLLNGPSSDYDYDDIQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKSEKRKLQREARDALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388236;
- 90% Identity
- iTF_00329385; iTF_00755636;
- 80% Identity
- -