Gnym021649.1
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963978555.1
- Location
- OZ021711.1:8736369-8744860[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-112 1.5e-107 360.5 21.5 1 300 65 352 65 352 0.96 2 2 0.042 1.7e+03 -0.8 2.8 7 231 384 419 353 427 0.44
Sequence Information
- Coding Sequence
- ATGAGTGAAGAAATAATCACAGAAGTGCCTCAAAACGTTGATAATGACAACGTGTTGTCGATTAAAGGAGTTACTATGACGGAAACGTCGGATTATACGGAAAACATTAGTGATATTAATGTTGACAATAATAAAACCAATCAAAGTGATGGTAGTGTAATTGAATCTTTCATGCAATGTACTAGCGGAGAGGCTGAAGCGAGGCTATGGGCAAAGAGACAAGCCAGAGCAGAGGCGAGAGATATACGCATGCGCGAATTAGAAAGACAACAAAAAGAACAAGAAGAAAACGCCGACAGACAATTCGATATGTTAGCGTCAGAACCAACTTCGTTAGTGAGAACACCGAGAAGTGCCGGAACTCGATATTTATCCAGTCGAAGAAGTTCCGAAGACTCTCTGGAAGATGGTGGAAGTTTAAGGGATTTAAGGCACGAATTGAAAGAGGTCGAAGAGAAATTCCGAAAAGCGATGATAGCCAATGCGCAGTTAGATAACGACAAAACTGCTCAGACTTATCAATTGGATCTATTGAAAGATAGatTAGAAGAATTAGAGGAAGACCATTCCCAATTAAAGAGGAAACACCGAGATAAGTGTCGTGAACACCAAACGTTAAAAAGTATTTGCACCAAATTAGAAGATGACTTGGTATTGACGAGGTTTGAACTTGGGGAACGGGATCGACTGATATCTGAAAAGGGATTAGTGATAGTTGGCGAAGAAATCCCACCGGATGAAAATGGCACGCAACATCCGCCGAAGAAAGCACTAGTTAGTGTCGAAAATGCTCATTTGTTGGAAAATGCTGGTGACGGAAGCTTGGATGTGCGATTATCTCGGTTTCTTAAAGAAAAAATCGAACTTCAGGATCAAATTAGCCATTTAAAACTAGaattagaagaagaaaaaaataagagaaggAAGCCGAGCTCGAGTGGAATTTTGAACGGACCGTCTTCTGATTATGACTATGATGACATTCAAAGAGAAGCGAGCAAACAGTTATCAGACTGGAAATTTAGAGCCCAAAAAGCGGAACAGGATGTAGCGACTCTGCAAGCCACGGTGGCGAGGTTAGAAACTCAAGTCATTAGGTATAAGACAGCTTCTGAAATTTCGGAGCAATCTGAAGAGGCTCTCAAAGCTGAGAAACGGAAGCTACAACGAGAGGCAAGAGATGCTCTAAGTCGAGCAGAAGAATTGGAAACATCAAATACCCATTTATTAAAGAGATTAGACAAATTAAAAAATGCAAAATCTGCCTTATTAAAAGAACTGTAG
- Protein Sequence
- MSEEIITEVPQNVDNDNVLSIKGVTMTETSDYTENISDINVDNNKTNQSDGSVIESFMQCTSGEAEARLWAKRQARAEARDIRMRELERQQKEQEENADRQFDMLASEPTSLVRTPRSAGTRYLSSRRSSEDSLEDGGSLRDLRHELKEVEEKFRKAMIANAQLDNDKTAQTYQLDLLKDRLEELEEDHSQLKRKHRDKCREHQTLKSICTKLEDDLVLTRFELGERDRLISEKGLVIVGEEIPPDENGTQHPPKKALVSVENAHLLENAGDGSLDVRLSRFLKEKIELQDQISHLKLELEEEKNKRRKPSSSGILNGPSSDYDYDDIQREASKQLSDWKFRAQKAEQDVATLQATVARLETQVIRYKTASEISEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388236;
- 90% Identity
- iTF_00910745;
- 80% Identity
- -