Rfun057929.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000039.1:18202916-18215719[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-116 1.2e-111 374.6 27.2 1 300 72 358 72 358 0.97 2 2 0.061 3.8e+03 -1.4 3.1 6 224 389 418 359 433 0.43
Sequence Information
- Coding Sequence
- ATGACGGAAAGTGAAGGTGAGTGCGCGGAAATCTCGACAAAAGAGGAGCCCAACAACAACGCGCTCGCCCTGGAGGGGGTCGCCTCGGCCGAAACGTCGGATTTCCTGGAGGAGAGCGGCAACTACAGCGGCGACACCAGCAAGGCGGACTCGGACGACGGCCTGGATGACAGCGACGTGATCCACTGCTTCATACACCACACCAGCGATGAAGCCGAGGCGAGACTTTGGGCCAAGAGACAGGCGAGGGCAGAAGCTAGGGAGATACGCATGCGCGAACTGGAGCGCCAGCAGAAGGAACAGGAGGAGAATGCCGACAGGCAGTTCGACATGCTGGCGGAGCCCCTGGCGAGGACGCCCAGGGGTACCACCGCTGGTAGTCGATACCTGTCCAGCAGGAGGAGTTCTGAGGACTCGCTGGAGGATGGGGGAAGCCTCAGAGAAATTCGGCATGAACTCAAAGAGGTCGAAGAAAAATTCCGGAAGGCTATGATAGCCAACGCCCAACTTGACAATGACAAGGCGGCACAGACGTATCAGTTGGAATTATTAAAAGATAGGTTAGAGGAATTGGAAGAGGAGCATTCTCAGCTGAAGCGCGAGCACCGGGACAAGTGCAGGGAGCACGACCAGCTGAAGAGGCTCTGCACCAAGCTGAAGGACGACTTGGCCGTGACGAGGGCCGAACTGGACGAGCGAGATCGGCTCATAGCCGAGAAGGGGCTGGTCATCGTCGGCGAGGAGGTGCCCCCCGACGAGGACGGCACCGTGCAACCCCCCAAGAAGGCGCTCGTAAGCGTGGAGAACGCGCAGCTGCTGGAGAGCGCCGGCGACGGGAGTCTAGACGTCCGGCTGGAAAAGTTTGCCAAGGAGAAGGGCGAGCTACAGGATCAAATTAGCCATTTAAAGTTAGAATTAGAGGAGGAGAAGAGCAAGAGGCGGAAGCCCAGTGCGGCGAGTCTGCTTAACGGTCCGTCATCTGACTACGACTACGATGACATCCAAAgggaagcaagtaaaCAACTGGCCGACTACAAGTTCAGAGCGCAGAAGGCCGAACAGGACGTGGCGACGCTGCAAGCGACAGTCGCCCGGCTCGAGAGTCAAGTAATAAGGTATAAAACCGCCGCTGAAGTGTCCGAACAGTCCGAGGAGGCTCTCAAGGCCGAGAAGAGGAAGCTGCAACGGGAGGCTAGGGACGCGCTGAGCAGAGCCGAAGAGCTGGAGACGTCCAACACCCACCTGCTCAAGAGGTTGGACAAGTTGAAGACCGCCAAATCGGCGCTCCTCAAGGAGCTCTGA
- Protein Sequence
- MTESEGECAEISTKEEPNNNALALEGVASAETSDFLEESGNYSGDTSKADSDDGLDDSDVIHCFIHHTSDEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPLARTPRGTTAGSRYLSSRRSSEDSLEDGGSLREIRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHDQLKRLCTKLKDDLAVTRAELDERDRLIAEKGLVIVGEEVPPDEDGTVQPPKKALVSVENAQLLESAGDGSLDVRLEKFAKEKGELQDQISHLKLELEEEKSKRRKPSAASLLNGPSSDYDYDDIQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKTAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388236;
- 90% Identity
- -
- 80% Identity
- -