Lqua039421.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963675555.1
- Location
- OY776677.1:18516106-18530930[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.11 8.8e+03 -2.2 0.0 230 260 19 47 17 69 0.65 2 3 7.4e-116 6.1e-111 372.7 29.1 1 300 81 368 81 368 0.96 3 3 0.03 2.5e+03 -0.3 0.1 120 162 366 408 366 411 0.81
Sequence Information
- Coding Sequence
- ATGACAGAAACTGAAGGTGTTTGTGCTGAAATCGAGACTAATGTCGCGCAAATTGGTGAAAAAGACGAACTGAATAACAACGTGCTTGTTTTGAAGGGTGTAACGGACACAGAAACCTCCGATTTTTTGGAAGAGAGTGgaaatttttgcgattacagcccTGAAAACGGCAAGGATGATTCCGACGTTCCAGATGAAAGTGATGTGATACATTCCTTTATAAACAACACCAGCGATGAAGCCGAAGCAAGACTTTGGGCCAAGAGACAGGCGAGGGCAGAGGCGAGGGAGATACGTATGCGCGAACTGGAGCGCCAGCAGAAAGAGCAAGAGGAGAATGCAGACAGGCAATTTGACATGTTGGCCGAGCCCATGGCCAGGACATCCATCAGGAGTGCTACCGCTGGAAGCCGGTACTTGTCCAGCCGGAGAAGTTCTGAAGATTCCTTGGAAGATGGGGGTAGTCTTAGAGAGTTACGACATGAACTCAAGGAGGTTGAAGAAAAATTCCGAAAGGCAATGATTGCCAACGCTCAACTTGACAATGATAAGGCGGCGCAAACGTATCAGTTAGAATTATTAAAAGATAGattagAAGAATTAGAAGAAGAACATTCTCAATTAAAAAGGGAACACCGAGAGAAATGCAGAGAGCACGACCAGCTGAAGAGGCTCTGCACCAAACTGAAAGACGACCTGGCTGTGACAAAAGCTGAGCTGGACGAGAGGGACCGGTTGATTACAGAGAAAGGGTTAGTTATCATAGGCGAAGAAGTACCTCCTGACGAGGACGGCACGATACAACCCCCTAAGAAAGCCCTTGTTAGTGTAGAAAATGCCCAGTTGCTGGAAAGTGCCGGAGATGGAAGTCTTGatgTCCGGCTGGCAAGGTTTGCCAAGGAAAAGAGTGAACTACAAGATCAAATTAGCCATTTAAAATTAGAATTAGAAGAAGAAAAGAGTAAAAGGAGGAAACCCAGTTCAACTGGTTTGCTTAACGGTCCCTCTTCAGACTACGATTATGATGATATCCAAAgggAAGCAAGTAAACAGCTTGCAGACTACAAATTTAGAGCCCAGAAAGCTGAACAAGACGTAGCAACGTTGCAAGCGGCAGTGGCAAGGTTGGAAAGTCAAGTTATAAGGTATAAAACAGCAGCAGAAGTATCGGAACAGTCGGAAGAGGCGCTGAAAGCcgaaaaacgaaaattacaaaGAGAGGTGTGTACATTAACCTAA
- Protein Sequence
- MTETEGVCAEIETNVAQIGEKDELNNNVLVLKGVTDTETSDFLEESGNFCDYSPENGKDDSDVPDESDVIHSFINNTSDEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPMARTSIRSATAGSRYLSSRRSSEDSLEDGGSLRELRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHREKCREHDQLKRLCTKLKDDLAVTKAELDERDRLITEKGLVIIGEEVPPDEDGTIQPPKKALVSVENAQLLESAGDGSLDVRLARFAKEKSELQDQISHLKLELEEEKSKRRKPSSTGLLNGPSSDYDYDDIQREASKQLADYKFRAQKAEQDVATLQAAVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREVCTLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388236;
- 90% Identity
- iTF_01289990;
- 80% Identity
- -