Smel039805.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963583905.1
- Location
- OY757312.1:133228558-133257706[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.086 7.8e+03 -1.9 0.1 229 261 18 48 8 68 0.60 2 2 2e-114 1.8e-109 368.0 30.7 1 300 81 367 81 367 0.97
Sequence Information
- Coding Sequence
- ATGACAGAAACTGAGGGTGTTTGTGCCGAAATCCAGAGTAACGCCGCGCAAATTGATGAAAAAGACGAAGTGAACAACAATGTGCTTAGTTTGAAAGGTGTAACGGACACGGAATCCTCCGATTTCTTGGAAGAAAGTGGAAATTTCTGCGATTTCAGTGCTGAAACCAGCAAGGACGATTCCGATGTTCCAGATGAAAGTGATGTGATTCATTTCTTCATACACAACACAAGCGATGAAgcCGAAGCGAGACTTTGGGCCAAGAGACAGGCGAGGGCAGAGGCGAGGGAGATACGCATGCGCGAACTGGAACGCCAGCAGAAAGAACAAGAGGAGAATGCTGACCGGCAGTTCGACATGTTGGCCGAGCCCATGGCTAGGACATCCAGGAGTGCCACCGCTGGTAGCAGGTACTTGTCCAGTCGGAGAAGTTCTGAAGATTCCCTGGAGGATGGGGGTAGTCTTCGAGAGTTGCGGCACGAACTCAAGGAGGTTGAAGAAAAATTCCGAAAGGCAATGATTGCCAACGCTCAACTTGACAATGATAAAGCTGCGCAAACGTATCAGTTAGAGTTATTAAAAGATAGATTAGAAGAATTAGAAGAAGAACATTCTCAACTAAAAAGGGAGCACCGAGAAAAATGCAGGGAGCACGACCAACTGAACAGGCTCTGTGCGAAACTGAAAGATGACCTGGCTGTGACAAAAGCTGAGCTCGATGAGAGGGACCGGTTGATTGCGGAGAAGGGATTGGTTATTATAGGAGAAGAAGTACCCCCTGACGAGGACGGCACGATACAACCTTCCAAGAAAGCCCTTGTTAGTGTAGAAAATGCCCAGTTGCTGGAAAGCGCAGGAGATGGAAGTCTTGatgtcCGGCTGACACGGTTTGCGAAGGAAAAGAGTGAACTGCAAGATCAAATTAGCCAtttaaaattagaattagaaGAGGAAAAGAGTAAAAGGCGGAAACCTAGTTCAACTGGTTTGCTAAATGGCCCCTCTTCCGACTATGATTATGATGATATCCAAAGGGAAGCAAGTAAACAGCTTGCAGACTACAAATTTAGAGCCCAGAAATCTGAACAAGATGTAGCGACGTTGCAAGCAACAGTTGCAAGGCTGGAGAGTCAAGTTATACGATATAAAACAGCAGCAGAAGTATCTGAACAGTCCGAAGAGGCACTGAAAGCCGAAAAGAGAAAATTACAAAGAGAGGTGTGTACATTAGCGTAA
- Protein Sequence
- MTETEGVCAEIQSNAAQIDEKDEVNNNVLSLKGVTDTESSDFLEESGNFCDFSAETSKDDSDVPDESDVIHFFIHNTSDEAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPMARTSRSATAGSRYLSSRRSSEDSLEDGGSLRELRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHREKCREHDQLNRLCAKLKDDLAVTKAELDERDRLIAEKGLVIIGEEVPPDEDGTIQPSKKALVSVENAQLLESAGDGSLDVRLTRFAKEKSELQDQISHLKLELEEEKSKRRKPSSTGLLNGPSSDYDYDDIQREASKQLADYKFRAQKSEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREVCTLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00388236;
- 90% Identity
- iTF_01289990;
- 80% Identity
- -