Basic Information

Insect: Colletes gigas
Gene Symbol: retn
Assembly: GCA_013123115.1
Location: WUUM01000010.1:9050193-9136389[+]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 5.2 1.2e+04 -3.4 0.0 67 82 203 219 196 220 0.68

2 2 5.5e-26 1.2e-22 79.9 0.0 2 89 226 311 225 311 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	5.2	1.2e+04	-3.4	0.0	67	82	203	219	196	220	0.68
2	2	5.5e-26	1.2e-22	79.9	0.0	2	89	226	311	225	311	0.96

Sequence Information

Coding Sequence: ATGGAAATGAGCGACGAGTACCAAGACATGGGAAATCCCGGAGGAGGGGTGGCTATGGCCAACATACCCATAGCCCATCATCGACACACGCCCGACAGTCCTATGTCGCATCAGGAGGAGGATCTGTCGGATCCGGACCTCCAGGATGAAGAGAGCGGGGAGGAGTTACCTCAGCAGCCACTTCAGGGTAACACACACTCTTCGTCGGACAATGCATCCGTACCGACCGGTACACCTACTCCATTAACGCACTTGAACAGTCTGATGAGCACGCACCATCCGCACTTTCTGGCCAAGCTTAAAATGGAGCAGAACGACGTGGACGCGTTGAACAACAAAAGTGGTCTGGAGGCGCTTCAAGCGGCGATGGGCAGCGGCGGATTTAATCTGCCGTTCTCGTTTCCGCCGCCGGCCGCGTTTTTAACGCCGCAGCATCACTCGCAGAACAGCCATCCGCAGTCGGGCATCGTCGGTGGTATAGGGAATCAAATGACATCGTCGGCGAGCTCGCATTCCAGCGAATCGTCGCAGGGCAGCGCGCGGAACGGCGGCGAACCTCGGGAGGGCAGCAATCATTCGCAGAACAACTCGACGGGAACGAATCACCAGCAGCAAACCAGCTGGAGCTTCGAAGAGCAGTTCAAACAGCTGTACGAGATCAACGACGATCCGAAAAGGAAGGAGTTCTTGGACGACCTTTTCAGTTACATGCAGAAACGAGGGACTCCGATCAATCGACTACCGATCATGGCGAAGTCGGTGCTGGATCTGTACGAGCTGTATAACCTGGTGATCGCTCGAGGCGGTCTGGTCGACGTAATCAACAAGAAGCTCTGGCAGGAAATCATCAAAGGCCTCCACCTGCCATCGAGCATCACTTCCGCCGCGTTCACTCTGCGCACCCAatacATGAAATACCTATACCCGTACGAGTGCGAGAAAAGACGATTATCAACGCCAGCGGAGTTACAGGCGGCGATCGATGGAAATCGTCGGGAAGGACGAAGAAGTAGCTACGGGGCGTACGCGAGCGGCGGGGGTGGAGCAGGTGACAGCTTGGTGCAAAGGAATCCGCATACGCCGAGCTCTCTCGCGTTGCACGCGCAAATATCGCCGCTGTCGTTGGTAACGGCGGTGGCAGCCGGTGGCCAACATCACGGGCCGCAATCTCTGGTGAACGGCAGTGCCGCGCACACACCACTGCCCCACCATCCTCACCACCCCCAGCACCCTCAAGGATCACTTGGACAACCACCGAATACCGGACCTATACCTGGAATGGCTCCGTCCGAATTCGAAGCACGCATGGTCGAGTACGTAAAGCTGTTGAACAAGGAATTGAGGAGCGCGGGTGCCGGCACCCCACCGCCGATGATCCATCGGCAAGGAAGCGCTTCTCCACCGTCGTCGACACCGCCGAGGGACGGGGCATTCAGCGCTCTCGAGATGTCCCGACTGACCCTGTGGAACATGTACAACAATAATACCCTCTACCCAGGAGTCGGTCATCAGCCACCCTTGTCGCCCCAAGCCTCCCATTCGCCTGTACCTCCAGCGTCTAGCCCGGAACCACAGAGAGAAGCTCTCGACTTGGGACTGAGGTCGTCGCCGGTGTCTTCGTCGCCTGCGAGACAAAGTTCGCCCTCCTCGGGCGGTAGCATGCAAGTGAAAAGGGATCCGGACTTAATCGGAACCCCGGGGCCACCACCAGCTAAAAGGTTACTCTCGGACGACGACAGTccgaacgaaaaaaatactCCAACTTCCATAGGCACgcacattaaaatttccaatcgagGAGATGGGAGAAACGGCGACAATTCCTTGGTAGTTAGTATGGAGCTAAATGGAGTAATGTATCAAGGCGTTCTTTTCGCCCAAAACGACAGCAGGACCACGGCCAGTACGACAACCAATAACAACAATAGTAGCACGAAAGCGTCGCGAAGCATTGTCTCGTGA
Protein Sequence: MEMSDEYQDMGNPGGGVAMANIPIAHHRHTPDSPMSHQEEDLSDPDLQDEESGEELPQQPLQGNTHSSSDNASVPTGTPTPLTHLNSLMSTHHPHFLAKLKMEQNDVDALNNKSGLEALQAAMGSGGFNLPFSFPPPAAFLTPQHHSQNSHPQSGIVGGIGNQMTSSASSHSSESSQGSARNGGEPREGSNHSQNNSTGTNHQQQTSWSFEEQFKQLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGAYASGGGGAGDSLVQRNPHTPSSLALHAQISPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHPQGSLGQPPNTGPIPGMAPSEFEARMVEYVKLLNKELRSAGAGTPPPMIHRQGSASPPSSTPPRDGAFSALEMSRLTLWNMYNNNTLYPGVGHQPPLSPQASHSPVPPASSPEPQREALDLGLRSSPVSSSPARQSSPSSGGSMQVKRDPDLIGTPGPPPAKRLLSDDDSPNEKNTPTSIGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQNDSRTTASTTTNNNNSSTKASRSIVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00292068; iTF_00633414; iTF_00391077; iTF_00754375; iTF_01120008; iTF_01122219; iTF_00963652; iTF_01122867; iTF_00625289; iTF_00216174; iTF_00683955; iTF_00760777; iTF_00141623; iTF_00224347; iTF_00219588; iTF_00214811; iTF_00142270; iTF_00965839; iTF_01070840; iTF_00214193; iTF_00231781; iTF_00221719; iTF_00232405; iTF_00230496; iTF_00233020;
90% Identity: iTF_00625289;
80% Identity: -