Bpas003308.1
Basic Information
- Insect
- Bombus pascuorum
- Gene Symbol
- retn
- Assembly
- GCA_905332965.1
- Location
- HG995273.1:14708123-14849203[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5 1.5e+04 -3.2 0.1 67 82 205 221 194 222 0.69 2 2 5.5e-26 1.8e-22 79.9 0.0 2 89 228 313 227 313 0.96
Sequence Information
- Coding Sequence
- ATGGAAATGAGCGACGAGTATCAGGACATGGGAAACCCTGGTGGAGGGGTGGCGATGGTCAACATACCTATTACCCATCATCAACATTCGTCTGATAGTCCATTGTCGCATCAGGAGGAGGATTTGTCGGATCCAGACCTTCAAGACGAAGAGAGCGGCGAAGAATTACCTCAACAACCACTTCAGGGTAACACGCACTCATCGTCGGATAATGCATCCGCACAGGCTAGTACACCTACTCCATTAACACACTTGAGCAGCCTGATGGGTGCACACCATCCGCACTTTCTGGCGAAGCTGAAAATGGAGGCAGCCGATGTGGATGCATTAACCAACAAAAGTGGACTAGAAGCCTTGCAAGTTGCTATGAGTGGAGCGGGATTCAATCTACCATTTTCATTCCCACCACCTGCAGCGTTCCTAACGCCACAGCACCATGTACAAAACAGTCATCCACAAGCGGGTAGTGCTATGGTGAACAGCATTGGAAATCAAATTACATCATCGGCCAGTTCGCATTCCAGCGAATCATCACAGGGTAGCGGTAGAAACGGTGGAGAGCCACGTGAAACCAACAATCATTCGCAGAATAACTCGACCGGCACGAATCACCAGCAACAGACCAGCTGGAGCTTCGAAGAGCAGTTCAAACAGCTCTATGAGATTAACGACGATCCGAAAAGAAAAGAGTTTCTGGATGACCTCTTCAGCTATATGCAGAAACGGGGAACACCTATCAACCGACTACCAATAATGGCCAAATCGGTGCTCGATCTGTATGAGCTGTATAATTTAGTGATTGCTCGTGGCGGACTCGTAGACGTAATCAACAAGAAGCTCTGGCAGGAAATCATCAAAGGTCTCCACCTGCCATCAAGTATCACTTCCGCCGCGTTTACTCTACGCACCCAGTACATGAAATACCTGTATCCGTACGAGTGCGAGAAGAGACGCCTATCAACACCGGCGGAATTGCAAGCGGCTATCGATGGGAATCGTCGGGAGGGACGCCGAAGCAGTTACGGGACATACGCGACGAGCAGCAGCACGACGAGCGAAAGTCTCGTGCAGAGGAACCCCCACACACCCAACTCGCTCGCGTTGCACGCGCAAATGTCACCGTTATCGTTGGTGACAGCGGTAGCGGCTGGTGGTCAACACCATGGACCGCAATCGCTGGTGAATGGGAGCGCCGCGCATACACCCTTACCCCACCATCCACATCATCCGCAACACACTCAGGGAATAGCAGGCCAATCCAATGCAGGACCTATTCCTGGGATGGCACCATCCGAGTTCGAAGCACGCATGGTCGAATACGTGAAGCTGTTAAACAAAGAACTTAGAAGTGCTGGGGGTGGTACACCGCCGCCCGTAATTCATCGACAAGGTAGCGCTTCACCTCCACCTTCGACACCACCGAGGGATGGCGCGTTCAGTGCTCTGGAAATGTCCCGGCTGACCTTGTGGAATATGTACAACAACAATACTCTATATCCAGGAATGGCTCATCAATCGCCCATGTCGCCACAGACCCCACACTCACCGGTACCTGCACCTCCCAGCCCTGAACCTCAAAGGGAAGCTCTTGACCTTGGACTCAGGTCATCACCCATATGCTTATCACCAGTAAGACAAAGCTCACCCTCTTCGGGTGGTAGCATGCAAATAAAGAAAGATCAAGATTTAACCAATACACCTGGGCCCCCGCCAGCAAAAAGATTACTCTCCCAAGACGATAGTCCGATGGAGAAAAGTGCAACGGTCGCTACCGGCACGCACATTAAAATTTCCAATCGAGGTGATGGAAGAAACGGTGATAATTCCTTAGTAGTCAGTATGGAGCTAAATGGAGTGATGTATCAAGGTGTTTTGTTCGCTCAAAATGACAGTACGACCACGAACGATACATCAACATGCGGCAGCAACAATTCGAAACCGTCTCGAAGTGTGGTTTTGTGA
- Protein Sequence
- MEMSDEYQDMGNPGGGVAMVNIPITHHQHSSDSPLSHQEEDLSDPDLQDEESGEELPQQPLQGNTHSSSDNASAQASTPTPLTHLSSLMGAHHPHFLAKLKMEAADVDALTNKSGLEALQVAMSGAGFNLPFSFPPPAAFLTPQHHVQNSHPQAGSAMVNSIGNQITSSASSHSSESSQGSGRNGGEPRETNNHSQNNSTGTNHQQQTSWSFEEQFKQLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYATSSSTTSESLVQRNPHTPNSLALHAQMSPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHTQGIAGQSNAGPIPGMAPSEFEARMVEYVKLLNKELRSAGGGTPPPVIHRQGSASPPPSTPPRDGAFSALEMSRLTLWNMYNNNTLYPGMAHQSPMSPQTPHSPVPAPPSPEPQREALDLGLRSSPICLSPVRQSSPSSGGSMQIKKDQDLTNTPGPPPAKRLLSQDDSPMEKSATVATGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQNDSTTTNDTSTCGSNNSKPSRSVVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00360694;
- 90% Identity
- iTF_00219588;
- 80% Identity
- -