Bbif003614.1
Basic Information
- Insect
- Bombus bifarius
- Gene Symbol
- retn
- Assembly
- GCA_011952205.1
- Location
- NW:6500403-6638819[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1 5.4e+03 -2.9 0.1 66 82 210 227 195 228 0.68 2 2 4.9e-26 8.6e-23 79.8 0.0 2 89 234 319 233 319 0.96
Sequence Information
- Coding Sequence
- ATGGAAATGAGCGACGAGTATCAGGACATGGGAAATCCCGGAGGAGGGGTAGCGATGGTCAACATACCTATTACCCATCACCAACGTACGCCTGATAGTCCATTGTCGCATCAGGAGGAGGATTTGTCAGATCCAGACCTTCAGGACGAAGAGAGCGGCGAAGAATTACCTCAGCAACCACTTCAGGGTAACACGCACTCTTCGTCGGATAATGCATCCGCACAGGATAATACACCTACTCCATTAGCACACTTGAACAGTCTGATGGGTGCACACCATCCGCACTTTCTGGCGAAGCTGAAAATGGAGTTGAACCATTTTTCACAGGCAATCGATATGGATGCATTAGCTCATAAAAGCGGATTAGAAGCGTTGCAAGTTGCTATGAGTGGAGCCGGATTCAGTCTACCATTTTCATTCCCACCACCTGCAGCGTTCCTAACGCCGCAGCACCACTTGCAAAACAGTCATCCACAAGCCAGTAGTACTATCATGAGCAGCATTGGAAATCAGTTGATATCATCGGCCAGTTCGCATTCCAGCGAATCATCACAGGGTAGCGGTAGAAACGGTGGAGAGCCTCGTGAGACCAGCAATCAATCGCAGAGTAACTCGACGGGCACGAATCACCAGCAACAGACCAGCTGGAGCTTCGAAGAGCAGTTCAAACAGCTCTATGAGATTAACGATGATCCAAAAAGAAAGGAGTTTCTGGATGACCTCTTCAGCTACATGCAGAAACGCGGAACACCGATCAACCGTCTGCCAATAATGGCAAAATCGGTGCTTGATCTATACGAGCTGTATAATTTAGTGATTGCTCGGGGCGGTCTCGTAGACGTAATCAACAAGAAGCTCTGGCAGGAAATCATCAAAGGCCTCCACCTGCCGTCAAGTATCACTTCCGCTGCGTTTACTCTACGCACCCAGTACATGAAATACCTGTATCCGTACGAGTGCGAGAAGAGACGCCTATCAACGCCGGCGGAATTGCAAGCGGCGATCGACGGGAATCGTCGAGAGGGACGTCGAAGCAGTTATGGGACATACGCGACGAGCAGCAGCACGACGAGCGAAAGTCTCGTGCAGAGAAACCCCCACACACCCAACTCGCTCCCGTTGCATGCGCACATATCACCGTTATCGTTGGTGACGGCGGTAGCGGCTGGTGGTCAGCACCATGGACCGCAATCGCTGGTGAATGGAAGTGCCGCGCACACACCCTTACCCCACCATCCGCATCATCCGCAACATTCTCAGGGAATAGCGGGCCAATTAAATGCAGAACTGCAGTTTCTCTTGCCCTCGATAATCTTTCCAGGACCTATTCCTGGGATGGCACCATCCGAGTTCGAAACACGCATGGTCGAATACGTGAAGCTATTAAACAAAGAACTTAGAGGTGGTGTTACACCGCCACCCGTAATTCATCGACAAGATAGCGCGTCACCTCCACCTTTGACACCACCGAGGGATGGCGCGTTCAGTGCCCTAGAAATGTCCCGACTGACATTGTGGAATATGTACAATAACAATACTCTATACCCAGGAATGGCTCATCAACCGCCCATGTCACCACAGGCCTCACACTCACCGGTACCTGCGCTTCCCAGTCCTGAACCTCAAAGGGAAGCTCTTGACCTTGGACTTAGGTCATCGCCCATATGCTTATCACCAATGAGGCAAAGTTCACCCTCTTCGGGAGGTAGCATACAAATAAAGAAGGATCAAGATTTAACTAATACATGTAGAATGCCACCGGCAAAAAGATCACTCTCCGAAGACGATAGTCCGGTGGAGAAGAATCCAATGGTCGCTGCCGGCAcacatattaaaatttccaatcgagGAGATGGAAGAAACGGTGATAATTCCTTAGTAGTCAGTATGGAGCTGAATGGAGTGATGTATCAAGGTGTTTTGTTCGCTCAAAGTAGCAGTAGAACCAAGGACAATGCACCAACATGCAGCAACAGCAATTCGAAACCGTCTCGGAGTGTGGTTTCGTGA
- Protein Sequence
- MEMSDEYQDMGNPGGGVAMVNIPITHHQRTPDSPLSHQEEDLSDPDLQDEESGEELPQQPLQGNTHSSSDNASAQDNTPTPLAHLNSLMGAHHPHFLAKLKMELNHFSQAIDMDALAHKSGLEALQVAMSGAGFSLPFSFPPPAAFLTPQHHLQNSHPQASSTIMSSIGNQLISSASSHSSESSQGSGRNGGEPRETSNQSQSNSTGTNHQQQTSWSFEEQFKQLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYATSSSTTSESLVQRNPHTPNSLPLHAHISPLSLVTAVAAGGQHHGPQSLVNGSAAHTPLPHHPHHPQHSQGIAGQLNAELQFLLPSIIFPGPIPGMAPSEFETRMVEYVKLLNKELRGGVTPPPVIHRQDSASPPPLTPPRDGAFSALEMSRLTLWNMYNNNTLYPGMAHQPPMSPQASHSPVPALPSPEPQREALDLGLRSSPICLSPMRQSSPSSGGSIQIKKDQDLTNTCRMPPAKRSLSEDDSPVEKNPMVAAGTHIKISNRGDGRNGDNSLVVSMELNGVMYQGVLFAQSSSRTKDNAPTCSNSNSKPSRSVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00360694;
- 90% Identity
- iTF_00219588;
- 80% Identity
- -