Amic023094.1
Basic Information
- Insect
- Agara michaeli
- Gene Symbol
- -
- Assembly
- GCA_018245675.1
- Location
- DWDX01033318.1:63-2490[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-11 6.1e-08 32.9 0.0 4 35 37 69 34 74 0.92
Sequence Information
- Coding Sequence
- GCTAAGCTGCTTGAGAACTCCCACGCCTGGTTGGGAGCTTCCACTTCATCTATCGCAGAGTTCCACGGTCATACGCTCAAGTTGAAAGCACCCACGTGGACGCAGAGCCAACTGCAAGAGGCTATACAGGCGGTCGTCACGCAACGGATGCGGTTCACACAGGCGGCGACGCACTACGGCATACCGAAAGGGACCTTGTACGACAATATTTTAGGCAAATCGAAACGAATGGCCGTGTTAGACGAGGCCGGCTTGCAGCCCGGCGAGGAGCGTACCGTGCTAGACTTTTGTTGCGAAACCAGCGTCTCCCCTTACAATAGACGCACGAAGAAGTCGTTGGCCGACGTGTTGTCGTTTGTCGAGAAACTGAGGAGGAGCAGGGACCCTGGGTTCGCGTTCATCGGTCTAACCGGCTTCAGGTGGTGGTGGGCGTTCTGTAAGAAACATTCGATAGTGTCACTGTACTACGAAGGCTCGACAAAGACGCGTAATTCCAAAGTGAAGGCCGAACACAACACTGATGATGAATCCTAA
- Protein Sequence
- AKLLENSHAWLGASTSSIAEFHGHTLKLKAPTWTQSQLQEAIQAVVTQRMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEAGLQPGEERTVLDFCCETSVSPYNRRTKKSLADVLSFVEKLRRSRDPGFAFIGLTGFRWWWAFCKKHSIVSLYYEGSTKTRNSKVKAEHNTDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00428929; iTF_01429865; iTF_00341258; iTF_00819084; iTF_01415760; iTF_01010292; iTF_00819992; iTF_00984993; iTF_00195107; iTF_00432068; iTF_01302244; iTF_00796454; iTF_00072714; iTF_00640215; iTF_00012893; iTF_00942750; iTF_01017670; iTF_01248041; iTF_00934668; iTF_00405849; iTF_00772810; iTF_00887342; iTF_00205057; iTF_00722977; iTF_00166860; iTF_00448076; iTF_00159763; iTF_00213364; iTF_01564565; iTF_00212374; iTF_00419702; iTF_00795638; iTF_00954359; iTF_01078137; iTF_01079003; iTF_01082368; iTF_00356111; iTF_00075429; iTF_00180392; iTF_00236570; iTF_01083261; iTF_00026784; iTF_00007025; iTF_01251681; iTF_01416715; iTF_00947832; iTF_00832847; iTF_01507119; iTF_01543855; iTF_01544819; iTF_01542900; iTF_01545689; iTF_01546585; iTF_00008848; iTF_00006226; iTF_00279057; iTF_00255762; iTF_01402660; iTF_00687822; iTF_00786709; iTF_00256798; iTF_00683251; iTF_00682312; iTF_01129971; iTF_00621172; iTF_00777941; iTF_00774438; iTF_00994294; iTF_00063511; iTF_00720183; iTF_01143770; iTF_01145222; iTF_01138890; iTF_01464092; iTF_00354013; iTF_00074431; iTF_00859391; iTF_00421280; iTF_00418898; iTF_00420475; iTF_01143040;
- 90% Identity
- iTF_01152959;
- 80% Identity
- -