Mita000488.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452969.1:8858147-8863030[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-10 8.7e-07 28.9 0.0 4 35 47 79 44 84 0.91
Sequence Information
- Coding Sequence
- atgtatttatgtacgGTTTGCAGGCTTAAGGCTAAACTGCTGGAGAACTCGCACGCGTGGTTGGGAGCCTCCACATCTTCTGTAGCAGAGTACCACGGTCATACAGTCAAGTTGAAAGCGCCGACGTGGACCCAGAGTCAGCTGCAAGACGCGATCCAAGCCGTGGTCCAGCAACGAATGCGGTTCACACAGGCCGCTACACACTACGGAATACCTAAAGGAACTCTATATGACAACATTCTTGGGAAATCTAAAAGAATGGCGGTATTAGATGaagctggcctgttggctaaTGAAGAGAGAGCCGTTTTAGACTTCTGCTGCGAGACCAGTGTGTCGCCTTACAACAGAAGAACAAAGAAGTCTCTGGCGGAGGTTTTAGCGTTTGTGGAGAAACTTAGAAGGAATAGGGACCCTGATTTCGTGTTCATAGGTCTAACAGGGTTCAGATGGTGGTGGGCGTTTTGTAAGAAACATTCCATAGTGTCACTGTACTACGAAGGGTCGAACAAAGCAAGGAGTGCAAAGGTTAAAGCGGAGTACGGAACTGACGACGAGTCGTAG
- Protein Sequence
- MYLCTVCRLKAKLLENSHAWLGASTSSVAEYHGHTVKLKAPTWTQSQLQDAIQAVVQQRMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEAGLLANEERAVLDFCCETSVSPYNRRTKKSLAEVLAFVEKLRRNRDPDFVFIGLTGFRWWWAFCKKHSIVSLYYEGSNKARSAKVKAEYGTDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00025190;
- 90% Identity
- -
- 80% Identity
- -