Pahi002228.1
Basic Information
- Insect
- Parelbella ahira
- Gene Symbol
- -
- Assembly
- GCA_018244795.1
- Location
- DWME01001069.1:16830-18668[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-11 6.3e-08 32.8 0.0 4 35 41 73 38 78 0.92
Sequence Information
- Coding Sequence
- ATGCCTTACCAAGCTAAGCTGCTGGAGAACTCCCACGCCTGGCTGGGAGCTTCCACTTCGTCTATCGCAGAATTCCACGGTCATACCCTCAAGTTGAAAGCCCCCACGTGGACCCAGAGCCAACTGCAAGAGGCCATACAGGCGGTCGTCACGCAAAGGATGCGCTTCACACAGGCTGCGACGCACTACGGAATACCCAAAGGAACATTGTACGACAATATATTAGGAAAGTCAAAACGGATGGCCGTGCTCGACGAAGCTGGATTGCAACCCAGCGAAGAACGAGCCGTGTTAGATTTCTGTTGCGAAACCAGCGTCTCCCCTTACAATAGACGGACTAAGAAGTCGTTGGCCGAAGTATTAACATTTGTCGAGAAATTGAGGAGGAGCAGAGACCCTGGCTTCGCGTTCATCGGTCTAACCGGCTTCAGGTGGTGGTGGGCGTTCTGTAAGAAACATTCGATTGTATCTCTCTACTACGAAGGCTCGAACAAGACTCGAAATTCTAAAGTGAAGGCTGAACACAATACTGATGACGAATCATAG
- Protein Sequence
- MPYQAKLLENSHAWLGASTSSIAEFHGHTLKLKAPTWTQSQLQEAIQAVVTQRMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEAGLQPSEERAVLDFCCETSVSPYNRRTKKSLAEVLTFVEKLRRSRDPGFAFIGLTGFRWWWAFCKKHSIVSLYYEGSNKTRNSKVKAEHNTDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00276272;
- 90% Identity
- iTF_00025190; iTF_00647927; iTF_00984993; iTF_01302244; iTF_00072714; iTF_00640215; iTF_00012893; iTF_00774438; iTF_00781769; iTF_00777941; iTF_00796454; iTF_00159763; iTF_00247998; iTF_00722977; iTF_00247124; iTF_01251681; iTF_01416715; iTF_01415760; iTF_00007025; iTF_00695429; iTF_00205057; iTF_01021118; iTF_00954359; iTF_01181829; iTF_01506277; iTF_01507119; iTF_01078137; iTF_01079003; iTF_01507998; iTF_00074431; iTF_01496486; iTF_00180392; iTF_00204296; iTF_00166860; iTF_00277292; iTF_00761583; iTF_01083261; iTF_00832847; iTF_00985935; iTF_00144497; iTF_00213364; iTF_00786709; iTF_00212374; iTF_00457175; iTF_00824663; iTF_01033660; iTF_01034521; iTF_00256798; iTF_00255762; iTF_01082368; iTF_00687822; iTF_00887342; iTF_00795638; iTF_01502912;
- 80% Identity
- -