Ctho021291.1
Basic Information
- Insect
- Cyclargus thomasi
- Gene Symbol
- -
- Assembly
- GCA_026546445.1
- Location
- JAOTAV010000025.1:263556-266643[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-10 1e-06 28.6 0.0 4 35 84 116 81 121 0.92
Sequence Information
- Coding Sequence
- ATGATGCGTTTCAGATCAACAGCCGCGAGAGATGAAAAGATCCTAACACCTCCGGGAGTTTACGATCTAAGACTCGTTCTTTGTATCGGCGGCCATCTTAGTTTTAATTGTCCTAATGATGTAAATGAAGAACAATGGAAAATAGTTGCGAAATTACTTGAGAACTCTCACGCCTGGCTCGGAGCTTCCACGTCGTCCATCGCAGCTTTCAACGTTTTGAAACTGAAATCACCGACTTGGACGCAAAGTCAGCTGCAAGAAGCGATCCAGGCTGTAGTCACCCAGAAGATGAGGTTTACTCAAGCGGCTACACATTATAGAATACCTAAAGGCACGTTATACGATAATATATTAGGAAAGTCTAAGAGAATGGCCGTTTTAGACGAGGTGGGCTTGAACTCTAACGAGGAGAGAATAGTTTTAGACTTTTGTTGTGAGACGAGCGTGTCTCCTTATAATAGACGAACTAAGAAATCGTTGACGGAAGTTCTAGTGTTTGTAGAGAAAATTCGCCGCGATAGAGATCCCAGTTTTACTTTTGTCGGTCTGACCGGCTTCAGGTGGTGGTGGGCTTTCTGCAAGAAGCATTCTATTGTGTCTCTATACTATGAAACCCCTTTTAAAGGGAAGATGTCCCGAGTCAAAACCGAACATAATTCCGACGATGAGTCTTGA
- Protein Sequence
- MMRFRSTAARDEKILTPPGVYDLRLVLCIGGHLSFNCPNDVNEEQWKIVAKLLENSHAWLGASTSSIAAFNVLKLKSPTWTQSQLQEAIQAVVTQKMRFTQAATHYRIPKGTLYDNILGKSKRMAVLDEVGLNSNEERIVLDFCCETSVSPYNRRTKKSLTEVLVFVEKIRRDRDPSFTFVGLTGFRWWWAFCKKHSIVSLYYETPFKGKMSRVKTEHNSDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00025190;
- 90% Identity
- iTF_01248041;
- 80% Identity
- -