Afus005733.1
Basic Information
- Insect
- Agapetus fuscipes
- Gene Symbol
- MBD2
- Assembly
- GCA_951799405.1
- Location
- OX637337.1:3152538-3160059[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-27 4.3e-23 81.2 0.6 1 59 5 78 5 147 0.86
Sequence Information
- Coding Sequence
- ATGAATATTTCCatagaaaaaaagaaaactgaTTGCACTGCTCTACCCAAAGGATGGCAAAGAGAAGAGGTTTTGAGGAAATCGGGTCTGTCCGCCGGAAAAGTTGATGTGTATTACTACAGTCCGTCGGGCAAGAAGTTCCGCAGCAAGCCGCAGCTGGCGCGCTACCTCGGGGACAGCCTGGACCTCGCTAGTTTCCACTTCCAGAACGGCCGCCTAAACTCCCACAAAAGCCACAGGCTGCGCAACACACAGTTTGACTACAGTCGTGGCGTGAGGTCGGACGCCTCGTTGGTGCCGCCCATCAGACAGACGGCGTCCATCTTCAAGCAGCCGGTGACGGTGCACAAGACGCAGGAGAGCAAAGTGAAGACAGATCTGAAGCACGGGCCGCAGGATAAGCCCAAGCAACTCTTCTGGGAGAAACGCCTTGAgGGTTTGAATGCCTGTGACTCATGGGGCGTCCTGGGAGGAGCGTCCCTGCCCAGGGGGATCAAGTCCATAGGTCCGCACATCAGTGACGCCACCACCATACAGGCACTCGCCACAGCTCTGCACATCACGCCACAACCCGTCACAGGTCAAAGTGTCGCAGCCAAAGCACAGATCGCCCAGAACCCCGGCGTCTTCTTGAACCCGGAGCAGCCGCTGGTGCAGGCGGTGAGCGTGGCAGAGGAGGACATCAGGAGGCAGGAGGAGAGAGTCAACAGGGCACGCAGAAAACTGCAGGAGGCCCTCGGGGTCTGCAGCCAGGATGTCATCAAAGTCTAA
- Protein Sequence
- MNISIEKKKTDCTALPKGWQREEVLRKSGLSAGKVDVYYYSPSGKKFRSKPQLARYLGDSLDLASFHFQNGRLNSHKSHRLRNTQFDYSRGVRSDASLVPPIRQTASIFKQPVTVHKTQESKVKTDLKHGPQDKPKQLFWEKRLEGLNACDSWGVLGGASLPRGIKSIGPHISDATTIQALATALHITPQPVTGQSVAAKAQIAQNPGVFLNPEQPLVQAVSVAEEDIRRQEERVNRARRKLQEALGVCSQDVIKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815105; iTF_01366980; iTF_00158053; iTF_00675141; iTF_01012304; iTF_01086303; iTF_00815808; iTF_01218336; iTF_00799276; iTF_00800194; iTF_00800976; iTF_01024953; iTF_00299065; iTF_00179359; iTF_00897812;
- 90% Identity
- -
- 80% Identity
- -