Laur010832.1
Basic Information
- Insect
- Limnephilus auricula
- Gene Symbol
- MBD3
- Assembly
- GCA_951813805.1
- Location
- OX638397.1:17822638-17828835[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-09 4.2e-05 23.7 0.0 37 73 4 35 3 39 0.89 2 2 0.00069 3.9 7.8 0.1 28 72 52 109 37 113 0.74
Sequence Information
- Coding Sequence
- ATGGTTAACAGTCCCTCGGGCAAGAAGTTCCGCAGCAAGCCGCAGCTGGCGCGCTACCTCGGAGACAGCCTGGACCTGGCGTGCTTTGACTTCCAGCAGGGCCGGCTAAACAGCCTGCTACTGCGCAAAAGCAGGAAACCTCGTGGCACACAATTTGATTACAGCCGGGGCGTGAGGTCCGATGCGTCGCTGGTCCCGCCCATCCGCCAGACAGCGTCCATCTTCAAGCAGCCGGTGACGGTGCATAAGACGCAGGAGAGTAAGGTCAAGACGGACTTCAAGCACGGGCCGCAGGACAAACCTAAGCAACTCTTCTGGGAGAAGAGACTAGagGGCCTGACTGCGTGTGACTCGTGGGGAGTTTTGGGGGGTGCGTCGTTGCCCCGAGGCATCAAGTCCATGGGCCCCCACATCAGCGAGGCCACCACCATCCAGGCACTGGCCACTGCCCTGCATGTCACCCCACAGCCCGTCACAGGGCAAACGGGTTCCAAGACGGCCATAGCGCAGAATCCTGGCGTGTTCCTGAATCCCGAGCAGCCGCTGGTGCAAGCCGTCAGTGTGGCGGAGGAGGACATCCGGCGCCAGGAGGAGCGAGTCAACCGCGCGCGCCGAAAGCTACAGGAGGCGCTCAACGCGTGTGCATAG
- Protein Sequence
- MVNSPSGKKFRSKPQLARYLGDSLDLACFDFQQGRLNSLLLRKSRKPRGTQFDYSRGVRSDASLVPPIRQTASIFKQPVTVHKTQESKVKTDFKHGPQDKPKQLFWEKRLEGLTACDSWGVLGGASLPRGIKSMGPHISEATTIQALATALHVTPQPVTGQTGSKTAIAQNPGVFLNPEQPLVQAVSVAEEDIRRQEERVNRARRKLQEALNACA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00023790;
- 90% Identity
- iTF_01218336;
- 80% Identity
- -