Smon015804.1
Basic Information
- Insect
- Sericinus montela
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029286605.1
- Location
- JAGSMR010000058.1:2205676-2223203[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-74 4.3e-70 237.0 22.5 1 262 130 395 130 420 0.87 2 3 1 2.7e+04 -6.8 17.0 1 48 421 467 421 487 0.72 3 3 0.066 1.8e+03 -1.5 1.4 213 238 475 499 463 500 0.59
Sequence Information
- Coding Sequence
- ATGGGCACCAAATCGGAGCTCGCTACATCAGACAATAGCGACGAGGAAAGTGGAGATGCATTTACCGATGGTGACTTTGACGTTTCTGAAGAAGAGGCGTTTGTAGTGAGATCTAATGCTTCAAAAGTTGCACAATTGCCCGTCAATGAAACCGTGAATCCCAATATAGAGGAATCGTTTGATGACGAATCAAACGACGGAAACAAAGAAACTTCTTCGAATGGCGGAGACGCTGATGACTTTGTtggaaatgtagaaaacggCTACGGTTCCCAGTGCGACGAACTGGACAATTACGTGGACCAGGCCGTAGCGGATGCGCGCAAAGATTCTAATGGCGAAATCAATCCGTCGATAGTCGGGATTCTCGGCGACCTGCAGAACCATGCGGAGCAGCGGctcgcggcgcggcgagcggcccGCGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGCGGCAGCAGCGTGAGCAGGAGGACCATGCCGACAAGGCGTTCGACATGTACGCAGAGACGGTGGGGCGACGCGGAGGCAGGCTAGCAGCGCTCAGCCCCTCCATACACTCGCCGCGACGCAGTTCCGAAGACTCCGCTGATGACGTCTTCAGCATCAAAGACCTGAGGCATGAGCTGAAAGAAGTGGAGGAGAAATTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCAGGAGGAGCACGCGCAGCTGCAGCGCGAGCACAAGGAGAAGTGCTCCGCGCACGAGCGGCTGCGGCGCGAGCACGCGGCGCTGGAGCGCGAGCTGGCGCGCGCGCGGGACGCGGTGCGCGCGCGCGAcgcggccgccgccgccgcgggCTTCGCCTTCGTGGAGGCGGccgcggcgggggcgggggggGAGGACGGCGAGCTCGCCGCGGCGGTGGCCGGCCTGGCGCAGGGCTTCGGCAGCGTGCCGCCGCTGGCGCTAGTGTCGCACCGCTCCGAGCAGCTGCTCAACGACGCCGGCGAGGGGACGCTGGACGTCCGGTTGCAAAAGCTGGTGAGCTCAAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGTGCCTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTCGCGGCGCACCACGAGCGTGAGCACGACGGCGAGCTGGAGTCGTTGCGCAAGTCGGTGGCGGAGGCGAAGgggcgcgcggcgcgggcggAGGCGGAGGCGGCGCTGCAGGCGGCGGCCGTGGCGCGGCTGGAGGCGCAGGTGGCCCGGCTGCGCGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGCGAGgcAAGAGAAGCTCTCAACAGAGTGGAGGAACTGGAAACGGAAAACAGTCACCTGACGAAACGTCTCGACAAACTGAAGAACGCCAAATCCGCGCTACTGAAGGAGCTGTGA
- Protein Sequence
- MGTKSELATSDNSDEESGDAFTDGDFDVSEEEAFVVRSNASKVAQLPVNETVNPNIEESFDDESNDGNKETSSNGGDADDFVGNVENGYGSQCDELDNYVDQAVADARKDSNGEINPSIVGILGDLQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYAETVGRRGGRLAALSPSIHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEHAQLQREHKEKCSAHERLRREHAALERELARARDAVRARDAAAAAAGFAFVEAAAAGAGGEDGELAAAVAGLAQGFGSVPPLALVSHRSEQLLNDAGEGTLDVRLQKLVSSKQALESEVRKLKLCLNEERAARQNGVAAHHEREHDGELESLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957966; iTF_01143842; iTF_00197380; iTF_01140935; iTF_01147395; iTF_01148827; iTF_01149614; iTF_00204368; iTF_01138960; iTF_01495061; iTF_01115717; iTF_01495791; iTF_00249719; iTF_01141690;
- 90% Identity
- -
- 80% Identity
- -