Pdem012702.1
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000016.1:9616002-9624958[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-73 2.9e-69 234.2 27.9 1 297 132 424 132 426 0.84 2 2 2 2.7e+04 -7.7 18.2 1 48 423 469 423 497 0.70
Sequence Information
- Coding Sequence
- ATGGGTCGTAAATCTGAACTAACTTCGGATAATAGTGATGAAGAAAGTGGAGAGGCCTTTACCGACGGCGATTTCGACGATTCAGGAGAAGAGTCCCTTGTAGAAAGAAGTAATGTTACCAAAACGAGTCAATTACCCGttaataaaactgtaaatccaagcattaaaaaattagatgCCGGCGAAGGTAATGATCCAAATAATGAAGAAGAACCCGTGACCAATGGTAAAGGAGGTACCGATGAAGGTGTGGATAACTTAGAAAACGGCCACTGCGCTCCACTGGACGACTTGGATAATTATATGGAGCAAGACGTGACGGATGTGCGCAAAGATTCTCAGAGCGAAATCAATCCGTCGATAGTCGGGATTCTCGGAGACCAGCACAACCATGCGGAGCAGCGTCTGGcagcgcggcgtgcggcgcgggcGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAACAAGAGGATCATGCCGACAAGGCATTTGACATGTACTCAGAGACAGTGGGTCGTCGAGGCGGACGGCTGGCGGCGCTCAGTCCCGCCGTGCACTCCCCGCGGCGCAGCTCCGAGGACTCCGCGGATGACGTCTTCAGCATTAAAGATCTCAGGCATGAGCTCAAAGAGGTTGAAGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGCATAGAGGAGCTCACAGAGGAACACGCGCAGTTGCAGCGTGAACATAAAGAAAAGTGCTCAGCGCACGAGCGACTAAAACGCGAGCACGCGAGTCTGGAGCGCGAGGTGACGGCGGCGCGGGACGCGGTGCGCGCGCGGGACTCCGCCGCGGCCGCCGCAGGCTTCGCCTTCGTAGAGGCGGAGCTCAACGGCACCGCGGAACAGACGGAGGTGAACGGCGCGGAGCCCGAGCTGGTGGCGCAGGGCTTCGGCAGCGTGCCCCCGCTCGCCCTCGTCTCACACCACTCGGAACAGCTGCTCAATGACGCAGGAGAAGGCACACTGGACGTGCGGTTGCAGCGGCTGGTGAGCTCTAAGCAGGCGCTGGAGTCTGAGGTGCGCAAGCTGAAGCTGTGTCTGAACGAGGAGCGCGCCGCCAGGCAGAACGGAGTCGCCGCACACCACGACAGGGAGCACGACACCGAGCTGGAATCGCTGCGCAAGTCGGTGTCGGAGGCGAAGGGTCGTGCGGCgcgcgcggaggcggaggcggcgCTGCAggcggcggcggtggcgcGGCTGGAGGCGCAAGTGGCCCGCCTCCGCGCGCGACAGGACCACCAGGACGAGCACGAGGAACAGCTCAAACAGGAACGACGTCGGCTGCAGAGGGAGGCTAGAGAAGCTTTGAACAGAGTGGAGGAGTTGGAGACGGAGAACAGTCACCTGACGAAGAGACTCGACAAGCTCAAGAACGCCAAATCAGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGRKSELTSDNSDEESGEAFTDGDFDDSGEESLVERSNVTKTSQLPVNKTVNPSIKKLDAGEGNDPNNEEEPVTNGKGGTDEGVDNLENGHCAPLDDLDNYMEQDVTDVRKDSQSEINPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYSETVGRRGGRLAALSPAVHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELTEEHAQLQREHKEKCSAHERLKREHASLEREVTAARDAVRARDSAAAAAGFAFVEAELNGTAEQTEVNGAEPELVAQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVAAHHDREHDTELESLRKSVSEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337765;
- 90% Identity
- iTF_01143842; iTF_01149614; iTF_01138960; iTF_01148827; iTF_01147395;
- 80% Identity
- -