Ppol008888.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000836215.1
- Location
- NW:821110-832481[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-73 2.1e-69 233.5 27.9 1 297 131 423 131 425 0.84 2 3 1 1.2e+04 -6.8 16.9 1 48 422 468 420 487 0.74 3 3 0.053 6.3e+02 -1.2 1.0 213 238 476 500 465 501 0.61
Sequence Information
- Coding Sequence
- ATGGGTCATAAATCCGAACTAACATCAGATAATAGTGACGAGGAGAGTGGTGAGGCCTTCACTGACGGCGATTTCGATGATTCTGGAGAAGAATCTTTTATCGAAAGATCTAATGTTATCAAAGCTAGTCAATTACCGGTTAATGAGACTGTAAATCCCAGCATCGATAAATCAGATACCGGCGAAGTTAATGATCCAAATAATGAGAAAGAACCTGTGACGAATGGTAATGAGAGCATCGATGGAAATGATAACTTAGAAAACGGCCACTGCGCTCCAATAGACGACTTAGACAATTATATGGAGCAAGGCGTGACGGATGCCCGCAAAGATTCTCAGAGCGAAATCAATCCGTCGATAGTCGGGATTCTCGGAGACCAGCACAACCATGCGGAGCAGCGACtggcggcgcggcgcgcggcgcgggcggAGGCGCGTGAAATCCGCATGCGGGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGATAAGGCATTCGACATGTACTCAGAGACAGTTGGGCGTCGTGGTGGAAGGCTTGCGGCGCTCAGCCCCGCCGTGCACTCGCCGCGGCGAAGTTCCGAAGATTCCGCGGACGACGTCTTCAGCATCAAAGACCTCAGGcaCGAGCTAAAGGAGGTAGAGGAGAAGTTCCGCAAGGCGATGATTCTGAATGCGCAGCTGGACAATGACAAGGCGGCGCTCGGCTACCAGCTCGAACTGCTTAAGGACCGCATCGAGGAGCTTACTGAGGAGCACGCGCAGCTGCAGCGTGAACATAAAGAAAAATGCTCAGCGCACGAGAGACTAAAACGCGAGCATGCGACTCTGGAGCGCGAGGTGAATGCGGCGCGGGACGCGGTGCGCGCGCGGGACTCCGCCGCCGCAGTCGCGGGCTTCGCCTTCGTGGAGGCCGAGCTCAACGGCACCGCGGAACAAACGGAGGTCAACGGGGCGGAGCCCGAGCTGGTGGCGCAGGGCTTCGGCAGCGTACCCCCGCTCGCGCTAGTCTCACATCACTCGGAACAGCTGCTCAATGACGCTGGAGAAGGCACACTGGACGTGCGGTTGCAGCGGCTGGTGAGCTCTAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGTGCCTCAACGAGGAGCGCGCCGCCAGGCAGAACGGCGTCGCCGCGCACCACGACAGGGAGCACGACAGCGAGCTGGAATCGCTGCGCAAGTCGGTGTCGGAGGCGAAggggcgggcggcgcgcgcggaGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCACGGCTAGAGGCGCAGGTGGCCCGTCTCCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGACGCCGGCTGCAGCGGGAGgcTAGAGAAGCTTTGAACAGAGTTGAGGAGTTGGAGACGGAGAACAGTCACCTGACGAAGCGACTTGATAAACTCAAGAACGCGAAGTCAGCGCTACTCAAGGAGCTGTGA
- Protein Sequence
- MGHKSELTSDNSDEESGEAFTDGDFDDSGEESFIERSNVIKASQLPVNETVNPSIDKSDTGEVNDPNNEKEPVTNGNESIDGNDNLENGHCAPIDDLDNYMEQGVTDARKDSQSEINPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYSETVGRRGGRLAALSPAVHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELTEEHAQLQREHKEKCSAHERLKREHATLEREVNAARDAVRARDSAAAVAGFAFVEAELNGTAEQTEVNGAEPELVAQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVAAHHDREHDSELESLRKSVSEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337765;
- 90% Identity
- iTF_01140935;
- 80% Identity
- -