Oale009510.1
Basic Information
- Insect
- Ornithoptera alexandrae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029030555.1
- Location
- JARDVY010000037.1:1206777-1217915[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-75 6.8e-71 239.6 24.6 1 268 132 398 132 417 0.87 2 2 1 2.7e+04 -7.7 19.0 1 48 418 464 418 491 0.68
Sequence Information
- Coding Sequence
- ATGGGTTTTAAATCGGCGCACACTTCAGATCACAGTGACGAGGAAAGTGGAGAGGCCTTCACAGACGGTGATTTCGGTGACTCGGACGAGGAGTCAGTCGTTGAACGGCCCGGTATTAAAGCCGGACCTTTGCCCGTCAATGAAACTATAAATCCTAGTGTCGGTGAAATAGTAATTGATGGAGTCAatgattgtaataaaactaaagacCTCTCAAATGGAACCGATGAAGCTGGTATTGAGGAcgatattgaaaatattgacAACCGGCGCTGCTCTCAAGTGGACCAGGTGGACAATTATATGGAGCAAGGCGTGACGGACGCTCGCAAAGACTCGCAGAGCGAAATCAATCCGTCAATAGTCGGAATTCTAGGCGACCAGCAGACCCATGCAGAGCAGCGgctggcggcgcggcgggcggcgcgtgCGGAGGCCCGCGAGATACGCATGCGCGAACTGGAGCGGCAGCAGCGCGAACAGGAGGACCATGCGGATAAAGCGTTCGACATGTACTCAGAGACAGTGGGGCGTCGCGGGGGTCGGCTAGCAGCCCTCAGCCCCTCCATGCACTCGCCTCGACGCAGCTCCGAGGATTCTGCCGAAGATGTCTTTAGCATCAAAGACCTTAGGCACGAGCTGAAAGAAGTGGAGGAGAAGTTTCGCAAGGCTATGATCCTAAATGCACAGCTTGATAATGACAAAGCGGCGCTCGGCTACCAGCTGGAACTGCTGAAAGATAGGATAGAGGAACTGCACGAGGAACACGCGCAGCTGCAGCGTGAACACAAGGAGAAGTGCTCCGCCCACGAGCGCCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGGCGCGGCGAGGGAcgcggtgcgcgcgcgcgaCTCGGCTGCTGCAGCCGCGGGCTTCGCCTTCGTCGAGGCGGAACTCAGCGGGGAGACGGTGGATGACGATGCGGCCGTGGTCGCGCAGGGCTTCGGCAGCGTGCCGCCACTCGCGCTCGTCTCTCACCACTCGGAGCAGCTGCTAAACGACGCAGGCGAAGGCACGCTGGACGTGCGGTTGCAGCGGTTGGTGAGTTCCAAGCAGGCGCTCGAGTCTGAAGTGCGGAAGCTGAAGCTCTGCCTCAACGAGGAACGAGCGGCACGGCAGAACGGCGTCGCATCGCACCACGACAGAGAGCATGACAGCGAGCTGGAGTCTTTGCGCAAATCGGTAGCAGAGGCGAAGGGTCGGGCGGCGCGGGCGGAGGCGGAAGCGGCGTTGCAGGCTGCCGCTGTGGCACGGCTCGAGGCGCAGGTAGCCAGGCTGCGCGCGCGTCAGGAACACCAGGACGAACACGAGGAGCAGCTCAAGCAGGAGCGCCGCCGTTTGCAGAGAGAGGCCCGAGAAGCTCTTAACCGAGTAGAAGAGTTGGAAACGGAAAACAGTCACTTGACGAAGCGTCTGGATAAACTGAAGAACGCCAAATCTGCACTCCTGAAGGAGCTGTGA
- Protein Sequence
- MGFKSAHTSDHSDEESGEAFTDGDFGDSDEESVVERPGIKAGPLPVNETINPSVGEIVIDGVNDCNKTKDLSNGTDEAGIEDDIENIDNRRCSQVDQVDNYMEQGVTDARKDSQSEINPSIVGILGDQQTHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYSETVGRRGGRLAALSPSMHSPRRSSEDSAEDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEHAQLQREHKEKCSAHERLKREHASLEREVGAARDAVRARDSAAAAAGFAFVEAELSGETVDDDAAVVAQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVASHHDREHDSELESLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQEHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337765;
- 90% Identity
- iTF_01495061;
- 80% Identity
- -