Pelw003104.1
Basic Information
- Insect
- Papilio elwesi
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029641285.1
- Location
- CM056339.1:1521338-1534580[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-74 1.2e-69 235.3 24.3 1 297 134 427 134 429 0.85 2 2 1 2.5e+04 -7.0 17.8 1 46 426 470 426 499 0.74
Sequence Information
- Coding Sequence
- ATGGGTCGTAGATCGGAACTAACTTCGGATAATAGTGACGAGGAGAGTGGCGAGGCCTTCACTGACGGCGATTTCGACGAAGATGAAGAGTCTGTTATCGAACGATCAAATGTTGCCAAAACCAATCAATTGCCAGTTAATGAAACCGTAAATCCCAGCTTCGAAAGATTAGATCCTTGTGAAGATCTAAATTTTGAAAAAGAACTTCAGTTGAAAAAGGAAATAACTAATGGTAATGAGGGCGCCGATGGGAATGTTGAAAACGCAGAAAACGGATACTGCGCTCCATCGGACGAGTCGGACAATTATATGGAGCAAGGTGTGACGGATGCGCGTAAAGATTCTCAGAGCGATATCGATACATCGATAGTCGGTATTCTCGGAGACCAGCACAGCCATGCGGAGCAGCGTCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCATTCGATATGTACTCCGAGACAGTGGGTCGTCGCGGCGGGCGGCTGGCCTCCCTCAGCCCCGCCGCGCACGCGCCGCGGCGCAGCTCCGAGGACTCCGCCGATGACGTCTTCTGCATCAAAGACCTAAGACATGAGCTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACAGAATAGAAGAGCTTCACGAGGAGCACGCGCAGCTGCAGCGTGAACATAAAGAAAAGTGTTCGGTGCACGAGCGACTAAAACGTGAGCACGCGACCCTGGAGCGTGAGGTGACGGCGGCGCGGGATGCGATCAGGGCGCGGGACtcggccgccgccgccgcgggGTTCGCCTTCGTGGAGGCAGAGCTCAATGGCACGGTCGAGCATGGCGCCGAGCTCAATGGGGCCGAGCCCGAGCTTGTGGCCCAGGGCTTCGGCAGCGTGCCCCCGCTTGCGCTCGTCTCGCATCACTCGGAACAGCTACTCAATGACGCCGGCGAAGGGACGCTGGACGTACGGTTGCAGCGGCTGGTGAGCTCTAAGCAGGCGCTGGAGTCGGAGGTTCGCAAGCTGAAGCTGTGCCTGAACGAGGAGCGCGCCGCGAGACAGAACGGCGTCGCCAGCCACCACGACAGGGAGCACGACAGCGAGCTGGAATCGCTGCGCAAGTCGGTGTCGGATGCGAAGGGCCGCGCGGCGCGGGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGGCTCGAGGCGCAGGTCGCGCGGCTGCGGGCGCGCCAGGAGCACCAGGACGAGCACGAGGAGCAGCTGAAGCAGGAGCGACGCCGCCTGCAGAGGGAGGCAAGAGAAGCCCTGAATCGAGTTGAAGAGTTGGAGACGGAAAATTGTCATCTGACGAAGCGGCTTGATAAACTCAAGAACGCAAAATCAGCACTTCTCAAGGAGCTGTGA
- Protein Sequence
- MGRRSELTSDNSDEESGEAFTDGDFDEDEESVIERSNVAKTNQLPVNETVNPSFERLDPCEDLNFEKELQLKKEITNGNEGADGNVENAENGYCAPSDESDNYMEQGVTDARKDSQSDIDTSIVGILGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYSETVGRRGGRLASLSPAAHAPRRSSEDSADDVFCIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEHAQLQREHKEKCSVHERLKREHATLEREVTAARDAIRARDSAAAAAGFAFVEAELNGTVEHGAELNGAEPELVAQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVASHHDREHDSELESLRKSVSDAKGRAARAEAEAALQAAAVARLEAQVARLRARQEHQDEHEEQLKQERRRLQREAREALNRVEELETENCHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337765;
- 90% Identity
- -
- 80% Identity
- -