Phel022245.1
Basic Information
- Insect
- Papilio helenus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_026546675.1
- Location
- JAOCNA010000027.1:897235-906144[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.42 1.8e+04 -4.1 0.1 166 192 30 56 28 75 0.68 2 3 2.2e-74 9.3e-70 236.5 24.2 1 297 131 416 131 418 0.84 3 3 1 4.3e+04 -7.5 17.9 1 48 415 461 415 488 0.70
Sequence Information
- Coding Sequence
- ATGGGTCATAAATCCGAACTAACACCAGATAACAGTGACGAGGAGAGTGGTGAGGCCTTCACAGACGGCGATTTCGACGATTCTGGAGAAGAGTCTCTCATCGAAAGATCTAATGTTATCAAAACCAGTCAATTGCCGGTTAATGAAACTGTAAATCCCAGCATCGATAAATTAGATACCGGCGAAGTTAATGATCCAAATAATGAAAAAGAACTTGTGACGAATGGTAATGAGGGCACCGATGGAAATGATAACTTAGAAAACGGCCACTGCGCTCCACTAGACGACTTGGACAATTATATAGAGCAAGGCGTGACGGATGCTCGCAAAGATTCTCAGAGCGAAATCAATCCGTCGATAGTCGGGATTCTCGGAGACCAGCACAACCATGCGGAGCAGCGTCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGGGAGTTGGAGCGGCAGCAGCGGGAGCAGGAAGACCATGCCGATAAGGCATTCGACATGTACTCAGAGACAGTGGGACGTCGTGGCGGGCGGCTGGCGGCGCTCAGCCCCGCCGTGCACTCGCCGCGGCGAAGCTCCGAAGACTCCGCGGACGACGTCTTCAGCATCAAAGACCTCAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAACTGCTCAAGGACCGCATCGAGGAGCTCACTGAGGAGCACGCGCAGCTGCAGCGTGAACATAAAGAAAAATGCTCAGCGCACGAGAGACTAAAACGTGAACACGCGACTCTGGAGCGCGAGGTGAATGCGGCGCGGGACGCGGTGCGCGCGCGGGACTCCGCCGCCGCAGCCGCGGGCTTCGCCTTCGTGGAGGCCGAGCTCAACGGCAACGCGGACCAAACGGAGGTCAACGGGACGGAGCCCGAGCTGGTGGCGCAGGGCTTCGGCAGCGTGCCCCCGCTCGCGCTCCTGCTCAATGACGCGGGAGAAGGCACACTGGATGTGCGGTTGCAGCGTCTGGTGAGCTCTAAGCAGGCGCTGGAGTCCGAGGTGCGCAAGCTGAAGCTCTGCCTCAACGAGGAGCGCGCCGCCAGACAGAACGGCGTCGCCGCGCACCACGACAGGGAGCACGACAGCGAGCTGGAATCGCTGCGCAAGTCAGTGTCGGAGGCGAAGGGTCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGGCTGGAGGCGCAGGTGGCCCGTCTCCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGACGCAGGCTGCAGCGGGAGGCTAGAGAAGCTTTGAACAGAGTTGAGGAGTTGGAGACGGAGAACAGTCACCTGACGAAGCGACTTGACAAGCTCAAGAACGCGAAGTCAGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGHKSELTPDNSDEESGEAFTDGDFDDSGEESLIERSNVIKTSQLPVNETVNPSIDKLDTGEVNDPNNEKELVTNGNEGTDGNDNLENGHCAPLDDLDNYIEQGVTDARKDSQSEINPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYSETVGRRGGRLAALSPAVHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELTEEHAQLQREHKEKCSAHERLKREHATLEREVNAARDAVRARDSAAAAAGFAFVEAELNGNADQTEVNGTEPELVAQGFGSVPPLALLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVAAHHDREHDSELESLRKSVSEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01337765;
- 90% Identity
- iTF_01140935;
- 80% Identity
- -