Pcoq005075.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- sip1
- Assembly
- GCA_001932985.1
- Location
- MNCL01000031.1:81699-84904[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-93 6e-89 298.9 15.2 2 275 393 658 392 658 0.98 2 2 0.082 1.1e+03 -0.5 0.1 244 269 672 697 661 706 0.65
Sequence Information
- Coding Sequence
- atgtcGGATAACGAGTACGAAAGATTTGAAATAACAGATTATGACTTGGAAAATGAATTCAACCCTAATCGTGGGCGTAGGAGGCAAACAAAACACCAACAGATTTATGGTATTTGGGCGGATGATAGTGAAAATGAGGAGGAACAAGAATTATCATCACGACGGAGAGGTAGGAAGATAAAAGACTACTCAGCTCCAGTCAATTTCGTCGCTGGAGGTATTCAACAGTCGGGCAAAAAGAACGAGGACGACGACGTTGAAAATGATGATTCACAAATTACAGATGAAGaGGACGAACGTCCATCATTTAGTAGGAAGCCAGTTGATCGAGCTGCGACTTCTTCAGAATCAGAATCGGAACCTGAAACCCGAACTAAGACTAGAAATGCTGGATTTGGAAGTACCTCAAATCGACCTTCCTCCATGACTTCTGGTCTTGGTAAATGGGAAGCGTACACAAAAGGAATTGgtgcaaaattattacttcaGATGGGCTACGAACCTGGAAAAGGTTTAGGCAAAGATCTTCAAGGTATTTCCCAACCTGTAGAAGCTCATATGAGAAAAGGCCGTGGTGCTATTGGTGCCTATGGCCCAGAAAAAGCAGCTTCTATACCAAGTCAAAAAGTACTGCCACAAGTTGATGAAGATGAGCGAGAAGCGAAGGAGTTTAAGGATAAATTGAATATGTGGAAGAAGGATGGTAAACCGGACAAGAGTAAAAAGAATCGTTATTACTATAGAAGTGTGGAAGAAGTTATCGAGAAAGGGAAAAAGTCTTCTTTTATAACTGATAAATACAGTAATAAACTAAGCAACGTAACAGTCATAGACATGACTGGTCCTGAAAAGAGGGTATTAAGTGGTTATCATGCACTGGGACAAGCAAAAATTCTAGATGAGGAACTCTACGAGCATAGACAGACAAAGAAATGCACTAATTTTACACTTCCAGAGCTaatgcataatttaaatttaattgtggaTATGTGTGAACAGGAAATCATTTCAATTGATAAAGCAGAAAGGGAAGCTAATGAAAAGCAGAAACAGCTTGAACACGAAAAGGAAaacttagaaaaaattgtgagGCTAGAAAGTGATCATATAGACACTTTAGAACAAGCACTCGGGTTAGTAGAATCTCTCACAAATCCAGATGAATCCCTAAATCTCTCCAAggcagaaaaaatttttgttcggCTGCAAACTGATTTTGCAGCTGAATATAAAGAATTCGGTTTGGGAGATCTGGCAGCAGGCGTAATAGCACCATTGGTCAACCAGGAGTTGAGTAGTTGGAAACCATTAGAAGAACCTACCAAGCATGTTGAAATGGTAAAGAAATGGCGGACTATATTAGGAATGCATCAATCAGAGACTAGGAACGTATTCGATCCATATTCATCTCTAGTTTGGGCTGGGATTATACCCAGCTTCCGACAGGCAGCTGGACTTTGGAATCCTAAGCAACATCAGTCAATGGCTGCTTTGCTAGAAGCATGGGCTCCTCTTTTTCCGACATGGATTCTAGATAATATTTTGGAGCAAGTTATTTTACCTAGGCTTTCATCAGCCGTTCAAGACTGGGACCCACTTACAGACACTGTTCCAATTCACGTCTGGATTTTACCATGGAGCGCAATTTTGGGGCATAAATTAGAgGAATTCGTGTATCCTATGATTCGTGAGAAGTTAGGAAATGCACTACACGCTTGGGTACCTCAGGACAGATCAGCAAGACTTATGCTAACTCCTTGGAAGTGCGCGTTCTCTGATGGTGAAATGCAGAGTTTCTTGCTGAAACACATCATACCTAAATTACAAATGACCCTAGCTGAGATGATCATAAACCCGCTTCAACAAGATTTAGaacTCTGGAATCAGGTCTGGGAATGGCATGAACTTATCTCTCCTCTATTTATGGCACAGTTACTGGACAAATATTTCTTCCCGAAGTGGATGCAAACTCTAGTCATATGGTTAAACCAGCAGCCTAATTTGGAACAAATCTCGAGATGGTATACCGGATGGAAGGGATTGATTTCTGAAGAGGTTTTACAACAGCCTAacataaaagaacattttcgaaGAGCTCTGGAACTTATGCATCGGGCAGTGTCGACTCCCCAAAATGCAGAAGTCCCTCCGGTCCAGCAGCAGCCACAACCGCAACCTCAGGTTCAACCACAACCACAACCAGTGTCTCATCCACCAGCTCTGATGGATCTTCAAATTCCACCCCCACCTCAGATAGAATTCAAGGAGTTAGTTTCACAGAGATGTGCCGAAAGGGGAATTATTTTTGCCCCATTACCTGGACGGAGGGAATTTGGAAAACAGGTGTACAGGGTGGGTAAATTGTTCTGTTACATCGATAGAGCTGTTCTTATGGTCAGTGATGGAAGCTTCTCAAATTGGACACCGACATCTTTGGGACTGCTTTTAGAAAGAGCTTCATAG
- Protein Sequence
- MSDNEYERFEITDYDLENEFNPNRGRRRQTKHQQIYGIWADDSENEEEQELSSRRRGRKIKDYSAPVNFVAGGIQQSGKKNEDDDVENDDSQITDEEDERPSFSRKPVDRAATSSESESEPETRTKTRNAGFGSTSNRPSSMTSGLGKWEAYTKGIGAKLLLQMGYEPGKGLGKDLQGISQPVEAHMRKGRGAIGAYGPEKAASIPSQKVLPQVDEDEREAKEFKDKLNMWKKDGKPDKSKKNRYYYRSVEEVIEKGKKSSFITDKYSNKLSNVTVIDMTGPEKRVLSGYHALGQAKILDEELYEHRQTKKCTNFTLPELMHNLNLIVDMCEQEIISIDKAEREANEKQKQLEHEKENLEKIVRLESDHIDTLEQALGLVESLTNPDESLNLSKAEKIFVRLQTDFAAEYKEFGLGDLAAGVIAPLVNQELSSWKPLEEPTKHVEMVKKWRTILGMHQSETRNVFDPYSSLVWAGIIPSFRQAAGLWNPKQHQSMAALLEAWAPLFPTWILDNILEQVILPRLSSAVQDWDPLTDTVPIHVWILPWSAILGHKLEEFVYPMIREKLGNALHAWVPQDRSARLMLTPWKCAFSDGEMQSFLLKHIIPKLQMTLAEMIINPLQQDLELWNQVWEWHELISPLFMAQLLDKYFFPKWMQTLVIWLNQQPNLEQISRWYTGWKGLISEEVLQQPNIKEHFRRALELMHRAVSTPQNAEVPPVQQQPQPQPQVQPQPQPVSHPPALMDLQIPPPPQIEFKELVSQRCAERGIIFAPLPGRREFGKQVYRVGKLFCYIDRAVLMVSDGSFSNWTPTSLGLLLERAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00628364; iTF_01049667; iTF_00424652; iTF_01461168; iTF_01183837; iTF_00717802; iTF_00937298; iTF_00936544; iTF_00454808; iTF_00453493; iTF_00877084;
- 90% Identity
- iTF_00628364;
- 80% Identity
- -