Dlin108107.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dioctria linearis
Gene Symbol
sip1
Assembly
GCA_963930735.1
Location
OZ005744.1:208513283-208516651[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.8e-93 1.6e-88 299.5 14.0 2 275 399 664 398 664 0.98
2 2 0.0084 5e+02 2.8 0.3 244 270 678 704 665 709 0.80

Sequence Information

Coding Sequence
ATGTCAGATAATGAGTACGAAAGGTTTGAAATAACAGACTATGATTTGGCTAATGAATTCAATCCTAATCGACCTCGAAGAAAGCAGACCAAACACCAGCAAATTTATgGAATTTGGGCGGATGATAGTGAAAACGAGGAAGAAGAGCATTATTCTAGGCGACGAGGAAGAAAAACGAAAGACTATTCCGCTCCCGTAAGTTTTGTTGCAGGAGGTATTCAGCAGGCCGGAAAAAAGgatgaagaggaagaagaagatgaggAAGAGGACGATACTCAAATTACTGATGAAGAAGATGAACGTCCATCGTTCGGTAAAAAGCAAATCGAAAAAGCTAGCTCATCATCCGAAACGGAGTCAGAGCCGGAACCACCACCACAACCGAAAATGTTTTCTAGAAATGCTGGATTTGGTAGCGGCCAGAATAGACCATCTAATGTGTCTAGTGCTTCTTTGGGAAAGTGGGAAGCACATACACGGGGTATAGGAGCAAAATTGTTGCTTCAAATGGGTTATAAGCCTGGAAAAGGCTTGGGGAAAGATCTTCAAGGGATAGCTCAACCAGTGGAAGCTCATATAAGGAAGGGAAGAGGAGCCATAGGCGCTTATGGACCGGAAAAGCTTGCAAGTACTCCAAGTCTAAAACTGCAACAACACATTGATGAAGATGAGCGCGAGTCTATAGAGTTTAAGGATAAAATGAACATGTGGAAAAAAGATGGAAAAccggaaaaaagtaagaaaaatcgTTATTTTTATCGGAGTGTTGAAGAAGTAATCGAAAAAGGAAAGAGATCAAACAGTTTAAAAGACAAATTCAGCAATAAATTAAGTAACGTAACAGTTATTGACATGACTGGTCCCGAAAAACGAGTGCTCAGCGGTTATCACGCCCTTGGTCAGACAAAGGTCATGGACGAAGATCTTTACGAACATAGGCAGgcaaaaaaatgcataaattttaCTTTACCCGAGCTAATGCACAATTTAAACTTGATCGTGGACATGTGTGAGCAGGAAATCATTTCCATTGATAAGGTAGAAAGAGAATCGGACGGTAAACAAAAGCAATTTGAGCACGAAAAAGAGAATTTGCGAAAAATTGTGAAGCTTGAAAATGACCATATCGATACTCTGGAAAATGCTCTTGAGCTTGTAGAGTCCTTGACAAATCCTGAAGATGAGTTAACTCTTGCCAAAGctgaaaaaattttcattcgGTTGCAAACAGATTTTTCAGCGGAATATAAAGAATTTGGTTTGGGTGATTTAGCGGCTGGAGTTATAGCACCGCTGGTTAATCAAGAACTCAGTAGTTGGAAACCTTTAGAGGAGCCCACTAAGTTTGTGGAGGCTATAAAGAAGTGGAGATCTATTTTAGGAATGCATCAGTCCCAGACTAGGAATGTTTTTGATCCGTACTCCTCACTGGTATGGGCTGGCGTTATTCCCAGTTTTCGTGCAGCAGCTGCAGAATGGAATCCTAAGGTACATCAACCAATGGCTGCTTTGTTAGATGCTTGGGCGCCCCTTTTACCAACTTGGGTACTTGATAATGTTTTGGAGCAAGTGATTTTGCTTAGACTTTCAGCCGCTGTCCAACTTTGGGATCCACTTACTGATACGGTGCCAATCCACGTTTGGATTCTTCCGTGGAGTGGAATTTTGGGTCATAAAATGGAGGAATTTGTTTACCCAATGATTCGTGAAAAACTTGGAAATGCTCTACAAGCTTGGGTACCACAAGACAGGTCAGCACGACTTATGATAACTCCATGGAAAACTGCATTTGCAGACGGAGATATGCAAAGTTTTTTGCTTAAGCATATTGTACCAAAGTTGCAAGCTACACTGTCTGAAATGATTATAAACCCACTCCAACAAGACTTGGaACCGTGGAATCAGGTATGGGAATGGCACGAACTTATTTCTCCAATTATAATGACTCAAATGTTGGATAAGTTCTTCTTCCCAAAGTGGACACAAACATTAGTAATTTGGTTAAATCAGCAACCAAATCTGGATCAAATCTCACGATGGTATACAGGATGGAAAAATTTACTTTCCGATGAAGTATTGCAACAAATAAATACCAAAGAACATTTTCGCCGAGCATTGGAACTTATGCATCGTGCTACAGCTGTAGCGGCTGCTGCAGCTGCTGCTATTCCTGTTCCAGAAGTACCATTAGTTCAACCACTACCTCAACCTCAGGTTCAGCCGCAGCCCCAACCACAGCCGCAGCCACAGCCTCAGACTCAGACTCAGACTCAGCAGCAATCTGTTTTACATCCACCAGCATTGATGGACTTACAAATCCCACCTCCTCCGCAACTTGAATTTAAGGAGCTTGTGTCGCAGCGGTGCGCTGAACGAGGTATTATCTTTGCACCTATGCCTGGTCGAAGAGAATTCGGGAAACAAGTGTACAGAGCGGGAAAACTGTTTTGCTACATAGATCGAGCTGTTCTTATGGTAAGTGATGGAAGTTTTACAAGTTGGACACCGACATCTTTAGGATTGCTTTTAGAAAGAGCCGTCAGTGGTTGA
Protein Sequence
MSDNEYERFEITDYDLANEFNPNRPRRKQTKHQQIYGIWADDSENEEEEHYSRRRGRKTKDYSAPVSFVAGGIQQAGKKDEEEEEDEEEDDTQITDEEDERPSFGKKQIEKASSSSETESEPEPPPQPKMFSRNAGFGSGQNRPSNVSSASLGKWEAHTRGIGAKLLLQMGYKPGKGLGKDLQGIAQPVEAHIRKGRGAIGAYGPEKLASTPSLKLQQHIDEDERESIEFKDKMNMWKKDGKPEKSKKNRYFYRSVEEVIEKGKRSNSLKDKFSNKLSNVTVIDMTGPEKRVLSGYHALGQTKVMDEDLYEHRQAKKCINFTLPELMHNLNLIVDMCEQEIISIDKVERESDGKQKQFEHEKENLRKIVKLENDHIDTLENALELVESLTNPEDELTLAKAEKIFIRLQTDFSAEYKEFGLGDLAAGVIAPLVNQELSSWKPLEEPTKFVEAIKKWRSILGMHQSQTRNVFDPYSSLVWAGVIPSFRAAAAEWNPKVHQPMAALLDAWAPLLPTWVLDNVLEQVILLRLSAAVQLWDPLTDTVPIHVWILPWSGILGHKMEEFVYPMIREKLGNALQAWVPQDRSARLMITPWKTAFADGDMQSFLLKHIVPKLQATLSEMIINPLQQDLEPWNQVWEWHELISPIIMTQMLDKFFFPKWTQTLVIWLNQQPNLDQISRWYTGWKNLLSDEVLQQINTKEHFRRALELMHRATAVAAAAAAAIPVPEVPLVQPLPQPQVQPQPQPQPQPQPQTQTQTQQQSVLHPPALMDLQIPPPPQLEFKELVSQRCAERGIIFAPMPGRREFGKQVYRAGKLFCYIDRAVLMVSDGSFTSWTPTSLGLLLERAVSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01256405;
90% Identity
iTF_00454808;
80% Identity
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