Ncya005329.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Neoitamus cyanurus
Gene Symbol
sip1
Assembly
GCA_947538895.1
Location
OX384544.1:466521-470543[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.3e-94 8.6e-90 301.9 14.6 2 275 394 659 393 659 0.98
2 2 0.11 1.8e+03 -0.9 0.1 244 269 673 698 662 708 0.68

Sequence Information

Coding Sequence
ATGTCGGACAACGAATATGAAAGATTTGAGATCACAGACTACGATTTGGAAAACGAATTCAATCCCAATCGACCCCGGAGGCGGCAGACGAAACACCAACAAATTTATGGTATTTGGGCTGACGATAGTGAAAATGAGGAGGAACAGGAGTTATCCTCCCGACGAAGAGGTAGAAAGGTAAAAGACTACTCGGCTCCTGTTAGTTTCGTCGCAGGGGGTGTCCAACAGTCTGGCAAAAATGATGATGAGGATGACTTCGAAAACGATGAATCACAAATCACAGATGAAGAGGACGAACGGCCTTCCTTCGTTCGAAAACCAGTCGAAAGAGCTTCCTCATCGGAATCAGATTCAGAGCCAGAAGTTCGCCCGCAACCTCCATCCAGAAATCCCGGGTTTGGGAGTGGACCCAGTCGTCCACCTTCCATGTCTGCAAAACTTGGCAAATGGGAAGCTCATACAAAAGGTATTGGCGCAAAACTCCTGCTTCAGATGGGCTATAAGCCCGGAAAAGGTTTGGGTAAAGACCTTCAAGGTATTGCCCAACCTGTGGAGGCGCATATGAGAAAGGGACGCGGAGCCATAGGCGCTTATGGTCCTGAAAAAGCTGCTAGTATAGCTAATCAAAAGGTACAACAACAGATTGACGACGATGAGCGGGAGGCAAAGGAGTTCAAGGATAAGATGAACATGTGGAAAAAGGACGATAAGCCGGAAAAGGGTAAGAAGAATCGATATTACTACAGAAGCGTTGAAGAAGTTATTGAGAAAGGAAAGAAATCGAGTTTCTTGACCGATAAGTACAGCAATAAACTGAGCAATGTAACCGTCATAGATATGACGGGCCCCGAGAAGAGGGTTCTAAGTGGCTATCACGCTTTAGGGCAAGCAAAAATTTTGGACGAAGAGCTCTATGACCACAGACAGGCTAAAAAATTCACTAATTTTGCCCTGCCGGAGCTCATGCACAATTTAAATTTAATTGTGGACATGTGCGAGCAAGAAATTATATCCATCGATAAATCAGAAAGAGAAGCTAATGAAAAACAAAAACAGCTTGAACATGAAAAGGAAAATCTTGAGAAAATCGTTAAACTTGAAAACGATCACATAGACACACTGGAACAGGCGTTAGACTTGGTAGAATGTCTTACCAACCCTGAAGAACCTTTAACCCTTTCGAGGGCGGAAAAAATTTTTGTTCAACTGCAAACCGAATTTGCCGCTGAATATAAGGAATTTGGGTTAGGAGATCTGGCAGCAGGAGTGATAGCTCCATTGGTCAATCAGGAATTGAATAGTTGGAAACCCTTGGAGGATCCCACCAAACACGTCGAAGCAGTTAAGAAGTGGCGAACAATTTTAGGAATGCATCAGTCAGAAACTAGAAATGTTTTCGATCCATACTCCTCCTTAGTATGGGCTGGTATTACACCTAGTTTCCGACAGGCAGCTGCTAATTGGAATCCTAAACAACATCAGTCAATGGCGGCGTTATTGGAGGCATGGGCTCCTCTTTTTCCGACTTGGATTCTGGATAATATATTGGAACAAGTTATATTACCTAGGCTATCGACAGCTGTGCAAGATTGGGATCCGCTTACAGACACTGTTCCAATTCATGTGTGGATTCTTCCCTGGAGCGCTATTTTAGGGCATAAATTGGAGGATTACATTTATCCTACTATCCGCGAGAAGCTAGGGAATGCTCTACTTGCTTGGGTTCCCCAGGACAGATCAGCCAGACTCATGCTCACTCCTTGGAAGTGCGCCTTCTCTGATGGAGAAATGCAGAGTTTTCTGCTGAACCACATCATTCCTAAGCTGCAAATAACTCTTGCTGAAATGATCATAAATCCACTTCAACAAGATTTGGAACTCTGGAACCAAGTTTGGGAATGGCATGAACTTCTCTCTCCCCTACATATGGCACACCTCCTTGACAAATACTTCTTTCCAAAATGGATGCAAACTCTCGTTATATGGCTGAACCAGCAACCTAACCTAGAGCAAATCTCACGATGGTACACAGGATGGAAGGGACTCATTTCAGATGAAGTCATACAACAGCCTAATATAAAAGAGCATTTTCGAAGAGCCTTAGAGCTGATGCATCGGGCAGTGTCTGCTCCTCAAAATGCAGAAGTTCCTCCAGTTCAACAGCAGCAGCAACAGCCTCAGCCACAACCTCAAGTTCAACCACAACCACAGCAGGTTTCTCATCCTCCTGCTCTAATGGATCTGCAAATTCCGCCTCCACCTCAGATAGAATTCAAGGAGTTGGTCTCTCAGAGATGTGCCGAGCGAGGAATTATTTTTGCACCATTACCTGGACGGAGGGAATTCGGCAAGCAAGTTTATAGGGTGGGTAAATTATTTTGCTATATCGATCGAGCAGTGCTAATGGTCAGCGATGGAAGTTTCTCCAATTGGGCGCCAACTTCTTTGGGATTGCTTTTAGAAAGGGCTTCGTAG
Protein Sequence
MSDNEYERFEITDYDLENEFNPNRPRRRQTKHQQIYGIWADDSENEEEQELSSRRRGRKVKDYSAPVSFVAGGVQQSGKNDDEDDFENDESQITDEEDERPSFVRKPVERASSSESDSEPEVRPQPPSRNPGFGSGPSRPPSMSAKLGKWEAHTKGIGAKLLLQMGYKPGKGLGKDLQGIAQPVEAHMRKGRGAIGAYGPEKAASIANQKVQQQIDDDEREAKEFKDKMNMWKKDDKPEKGKKNRYYYRSVEEVIEKGKKSSFLTDKYSNKLSNVTVIDMTGPEKRVLSGYHALGQAKILDEELYDHRQAKKFTNFALPELMHNLNLIVDMCEQEIISIDKSEREANEKQKQLEHEKENLEKIVKLENDHIDTLEQALDLVECLTNPEEPLTLSRAEKIFVQLQTEFAAEYKEFGLGDLAAGVIAPLVNQELNSWKPLEDPTKHVEAVKKWRTILGMHQSETRNVFDPYSSLVWAGITPSFRQAAANWNPKQHQSMAALLEAWAPLFPTWILDNILEQVILPRLSTAVQDWDPLTDTVPIHVWILPWSAILGHKLEDYIYPTIREKLGNALLAWVPQDRSARLMLTPWKCAFSDGEMQSFLLNHIIPKLQITLAEMIINPLQQDLELWNQVWEWHELLSPLHMAHLLDKYFFPKWMQTLVIWLNQQPNLEQISRWYTGWKGLISDEVIQQPNIKEHFRRALELMHRAVSAPQNAEVPPVQQQQQQPQPQPQVQPQPQQVSHPPALMDLQIPPPPQIEFKELVSQRCAERGIIFAPLPGRREFGKQVYRVGKLFCYIDRAVLMVSDGSFSNWAPTSLGLLLERAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01256405;
90% Identity
iTF_00628364;
80% Identity
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