Pmer000799.1
Basic Information
- Insect
- Polistes metricus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_010416925.1
- Location
- QUOH01000011.1:3421345-3424030[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.6e-65 7.8e-61 205.6 19.5 1 154 29 181 29 187 0.97 2 4 1.1e-34 1.5e-30 106.2 3.9 198 300 185 283 181 283 0.95 3 4 0.0041 58 2.5 2.6 122 172 283 333 282 339 0.90 4 4 0.035 4.9e+02 -0.6 4.6 196 233 316 352 299 358 0.48
Sequence Information
- Coding Sequence
- ATGGAGTCTGCTGTAACTGGACGAAGACGAACCGCCACACGGCATTCTGCTGAAGATCAAGCTCTTGACCAAATAGCTAAAGAGGCAGAAGCACGGCTAGCAGCAAGAAGACAAGCAAGAGCAGAAGCTAGAGAAATTAGAATGCGCGAATTGGAAAGACAACAAAAGGAAGCGGAAGAAAATGCTGATAGAGTTTATGACATGTGTTCAGaTCCTAATAGAGCCATGAGAGTAACTCCAGATCCTGTGAGGACGTCACGCTTGCTCacaaattcgaataattttcaatccaGTTGTAAATCATCGGAAGATTCATTAGAAGATGTAGGCCTTGGTAGAGATCTTAGGTTAGAGCTGAAGGAATTCGAAGAAAAGTTTCGAAAAGCAATGATAGCTAATGCCCAATTagataatgaaaaatcttcttttGCATATCAAgttgatatattaaaagataaattggAAGAATTGGAAGAAATGGCAGCACAGTTGCGTAGAGAACTTCGGGAGAAGAATCGAGACGCCGAACAGTTAAAACGACTTAGTGGATCCTGCCATAGAAAAAGAGTATTAGTTAGTAAAGAATCTGcagatttattagaaaatgcTGGAAAAGGATCCTTGGaTGTTCGACTGAGAAAGTTCGCTtcggagaaaaaagaattagaagatCAAATACGACATTTAAGATTGGAATTAGAAGAAACCAAGAATCGCATAAGATCTGAGAGATCACCGGGTGCAGTATTAGGTGGCTTAACGGATTCTGAGGATATTCAACGAGAAGCTAATAAACTTTTAGCCGACTACAAATTCAAGCTGCAAAAGGCGGAACAAGACATGTCTACTTTACAAGCCACTGTAGCTAGATTAGAAAGTCAAGTAATACGCTATAAGTCTGCGGCAGAAGCATCTGAGAAGGCAGAGGATGAACTcaaagttgaaaaaagaaaattgcaaaGAGAAgtTAGAGAATCTCAAGGACGTGTCGAAGAACTCGAAACAGCGAATTCTCATTTACAAaggcgattagataaacttaAAAATGCTAAATCTGCtctttttaaagatctttga
- Protein Sequence
- MESAVTGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSDPNRAMRVTPDPVRTSRLLTNSNNFQSSCKSSEDSLEDVGLGRDLRLELKEFEEKFRKAMIANAQLDNEKSSFAYQVDILKDKLEELEEMAAQLRRELREKNRDAEQLKRLSGSCHRKRVLVSKESADLLENAGKGSLDVRLRKFASEKKELEDQIRHLRLELEETKNRIRSERSPGAVLGGLTDSEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALFKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128197; iTF_01232398; iTF_01513472; iTF_01232995; iTF_01234342; iTF_01514822; iTF_01089993; iTF_01514154; iTF_01233653; iTF_01512183; iTF_01512827;
- 90% Identity
- -
- 80% Identity
- -