Pcan005152.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_001313835.1
- Location
- NW:1012140-1017406[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.7e-111 9e-107 355.9 32.0 1 300 29 321 29 321 0.94 2 3 0.0042 39 2.4 3.2 121 171 320 370 318 374 0.91 3 3 0.038 3.5e+02 -0.7 4.2 135 231 355 388 340 395 0.45
Sequence Information
- Coding Sequence
- ATGGAGTCTGCTGTAACTGGACGAAGACGAACCGCCACACGGCATTCTGCTGAAGATCAAGCTCTTGACCAAATAGCTAAAGAGGCAGAAGCTCGACTAGCAGCAAGAAGACAAGCAAGAGCAGAAGCTAGAGAAATTAGAATGCGCGAATTGGAAAGACAACAAAAGGAAGCGGAAGAAAATGCTGATAGAGTTTATGACATGTGTTCAGATCCTAATAGAGCCATGAGAGTAACTCCAGATCCTGTGAGGACGTCACGCTTGCTCacaaattcgaataattttcaatccaGTTGTAAATCATCGGAAGATTCATTAGAAGATGTAGGCCTTGGTAGAGATCTTAGGTTAGAGCTGAAGGAATTTGAAGAGAAGTTTCGAAAAGCAATGATAGCTAATGCTCAATTagataatgaaaaatcttCTTTTGCATATCAAgttgatatattaaaagataaattggaAGAATTGGAAGAAATGGCAGCACAGTTGCGTAGAGAACTTCGGGAGAAGAATCGAGATGCCGAACAGTCAAAACGACTTAGTCAAAGATTAAAAGATGACTTAGATTTATGCAGAACACAATTATTAGAAAGGGATACACTCATTCAgGAAAATGGATTAGTAATAGTTGAAGATGAAGGAACTGATGAAGAAGACGATGTTGAAGGTGGATCCTGCCATAGGAAAAGAGTTTTAGTTAGTAAAGAATCTGcagatttattagaaaatgctGGAAAAGGATCCTTGGatGTTCGACTGAGAAAGTTCGCTtcggagaaaaaagaattagaagatCAAATACGACATTTAAGATTGGAATTAGAAGAAACCAAGAATCGCATAAGATCTGAGAGATCACCGGGTGGCTTAACGGATTCTGAGGATATTCAACGAGAAGCTAATAAACTTTTAGCTGACTACAAATTCAAGCTGCAAAAGGCGGAACAAGACATGTCTACTTTACAAGCCACTGTAGCTAGATTAGAAAGTCAAGTAATACGCTATAAATCTGCGGCAGAGGCATCTGAGAAGGCAGAGGATGAACTCaaagttgaaaaaagaaaattgcaaaGAGAAgttAGAGAGTCTCAAGGACGTGTCGAAGAACTCGAAACAGCGAATTCTCATTTACAAAGGCGATTAGATAAACTTAAAAATGCTAAATCTGCTCTTTTTAAAGATCtttga
- Protein Sequence
- MESAVTGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSDPNRAMRVTPDPVRTSRLLTNSNNFQSSCKSSEDSLEDVGLGRDLRLELKEFEEKFRKAMIANAQLDNEKSSFAYQVDILKDKLEELEEMAAQLRRELREKNRDAEQSKRLSQRLKDDLDLCRTQLLERDTLIQENGLVIVEDEGTDEEDDVEGGSCHRKRVLVSKESADLLENAGKGSLDVRLRKFASEKKELEDQIRHLRLELEETKNRIRSERSPGGLTDSEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALFKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235024;
- 90% Identity
- iTF_01234342; iTF_01232995; iTF_01514822; iTF_01089993; iTF_01514154; iTF_01233653; iTF_01512827; iTF_01513472;
- 80% Identity
- -