Pdor007525.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_010416905.1
- Location
- QUOG01000006.1:5809079-5811731[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.8e-113 9.9e-109 362.9 30.3 1 300 29 325 29 325 0.97 2 3 0.0058 84 2.0 2.8 122 171 325 374 324 378 0.91 3 3 0.025 3.6e+02 -0.1 3.8 135 231 359 392 337 399 0.48
Sequence Information
- Coding Sequence
- ATGGAGTCTACTGTAACTGGACGAAGACGAACCGCCACACGGCATTCTGCTGAAGATCAAGCTCTTGACCAAATAGCTAAAGAGGCAGAAGCTCGACTAGCAGCAAGAAGACAAGCAAGAGCAGAAGCTAGAGAAATTAGAATGCGCGAATTGGAAAGACAACAAAAGGAAGCGGAAGAAAATGCTGATAGAGTTTATGACATGTGTTCAGATCCTAATAGAGCCATGAGAGTAACTCCAGATCCTGTGAGGACGTCACGCTTGCTCacaaattcgaataattttcaatccaGTTGTAAATCATCGGAAGATTCATTAGAAGATGTAGGCCTTGGTAGAGATCTTAGGTTAGAGCTGAAGGAATTCGAAGAAAAGTTTCGAAAAGCAATGATAGCTAATGCCCAATTagataatgaaaaatcttcTTTTGCATATCAAgttgatatattaaaagataaattggaAGAATTGGAAGAAATGGCAGCACAGTTGCGTAGAGAACTTCGGGAGAAGAATCGAGACGCCGAACAGTTAAAACGACTTAGTCAAAGATTAAAAGATGACTTAGATTTATGCAGAACACAATTATTAGAAAGGGATACACTCATTCagGAAAATGGATTAGTAATAGTTGAAGATGAAGGAACTGATGAAGAAGACGATGTTGAAGGTGGATCCTGCCATAGAAAAAGAGTATTAGTTAGTAAAGAATCTGcagatttattagaaaatgctGGAAAAGGATCCTTGGaTGTTCGACTGAGAAAGTTCGCTtcggagaaaaaagaattagaagatCAAATACGACATTTAAGATTGGAATTAGAAGAAACCAAGAATCGCATAAGATCTGAGAGATCACCGGGTGCAGTATTAGGTGGCTTAACGGATTCTGAGGATATTCAACGAGAAGCTAATAAACTTTTAGCCGACTACAAATTCAAGCTGCAAAAGGCGGAACAAGACATGTCTACTTTACAAGCCACTGTAGCTAGATTAGAAAGTCAAGTAATACGCTATAAGTCTGCGGCAGAAGCATCTGAGAAGGCAGAGGATGAACTCaaagttgaaaaaagaaaattgcaaaGAGAAgtTAGAGAATCTCAAGGACGTGTCGAAGAACTCGAAACAGCGAATTCTCATTTACAAaggcgattagataaacttaAAAATGCTAAATCTGCtctttttaaagatctttga
- Protein Sequence
- MESTVTGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSDPNRAMRVTPDPVRTSRLLTNSNNFQSSCKSSEDSLEDVGLGRDLRLELKEFEEKFRKAMIANAQLDNEKSSFAYQVDILKDKLEELEEMAAQLRRELREKNRDAEQLKRLSQRLKDDLDLCRTQLLERDTLIQENGLVIVEDEGTDEEDDVEGGSCHRKRVLVSKESADLLENAGKGSLDVRLRKFASEKKELEDQIRHLRLELEETKNRIRSERSPGAVLGGLTDSEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALFKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235024;
- 90% Identity
- iTF_01232398;
- 80% Identity
- -