Vcra003250.1
Basic Information
- Insect
- Vespa crabro
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_025728115.1
- Location
- JAITYU010019891.1:16856-19676[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-20 3.1e-16 59.2 15.6 1 43 29 71 29 72 0.97 2 4 1.6e-80 2.3e-76 256.6 18.8 71 300 69 293 68 293 0.97 3 4 0.0031 45 2.9 2.4 122 172 293 343 292 349 0.90 4 4 0.054 7.8e+02 -1.2 0.1 213 236 343 365 339 367 0.75
Sequence Information
- Coding Sequence
- ATGGAATCTACTGTAACTGGACGAAGGCGTACTGCCACACGGCATTCTGCTGAGGATCAAGCACTTGATCAAATAGCTAAAGAGGCAGAAGCACGATTAGCTGCAAGGAGACAAGCAAGAGCTGAAGCTAGAGAAATCCGAATGCGTGAATTGGAAAGACAACAGAAAGAAGCAGAAGAAAATGCTGATAGAGTTTATGACATGTGTTCAGAAGATTCATTAGAAGATGTGGGACTTGGTAGAGATCTTAGGTTAGAGCTGAAGGAATTTGAAGAGAAATTCAGAAAAGCAATGATAGCTAATGCCCAATTAGACAATGAAAAATCTTCTTTTGCCTATCAAGTTGATATATTAAAAGATAAATTGGAAGAATTAGAAGAAATGGCAGCCCAATTACGTAGAGAACTTCGAGAGAAGAATCGAGACGCTGAACAATTAAAACGACTTGGTCAAAGATTAAAAGATGATTTAGATTTATGCAGAACACAATTGTTAGAAAGGGATACATTAATTCAGGAAAATGGATTAGTGATAGTTGAAGATGAAGGAACCGATGAAGAAAATGATGTTGAAAGTGGACCCTGCCATAGAAGAAGAGTATTAGTTAGTAAAGAGTCTGCAGATTTATTGCAGAATGCTGGAAAAGGATCCTTGGACGTTCGACTGAGAAAGTTCGCTTCGGAGAAAAAAGAATTAGAAGATCAAATACGACATTTAAGATTGGAATTAGAAGAAACCAAGAATCGCATTAGATCTGAGAGATCCCCGGGTGCAGTATTAGGTGGCTTAACGTATTCTGAAGATATTCAACGAGAGGCTAATAAGCTTTTAATCGATTACAAATTCAAGCAGCAGAAAACGGAACAGGATATGTCTACGTTACAAGCCACGGTGGCTAGATTAGAAAGTCAAGTAATACGTTATAAGTCTGCGGCAGAAGCATCTGAGAAAGCGGAAGATGAACTCAAAATTGAAAAGAGAAAATTGCAAAGAGAAGTTAGAGAGTTTCAAGGACGCGTTGAAGAGCTCGAAACAGCAAACTCGCATTTACAAAGGCGATTAGATAAACTTAAAAATGCTAAATCCGCTCTTTTTAAAGATCTTTGA
- Protein Sequence
- MESTVTGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSEDSLEDVGLGRDLRLELKEFEEKFRKAMIANAQLDNEKSSFAYQVDILKDKLEELEEMAAQLRRELREKNRDAEQLKRLGQRLKDDLDLCRTQLLERDTLIQENGLVIVEDEGTDEENDVESGPCHRRRVLVSKESADLLQNAGKGSLDVRLRKFASEKKELEDQIRHLRLELEETKNRIRSERSPGAVLGGLTYSEDIQREANKLLIDYKFKQQKTEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKIEKRKLQREVREFQGRVEELETANSHLQRRLDKLKNAKSALFKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235024;
- 90% Identity
- -
- 80% Identity
- -