Vpen000584.1
Basic Information
- Insect
- Vespula pensylvanica
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_014466175.1
- Location
- CM025346.1:267323-269916[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-113 4.6e-109 363.8 28.8 1 300 29 325 29 325 0.98 2 2 0.012 1.5e+02 0.9 4.7 122 172 325 375 323 392 0.82
Sequence Information
- Coding Sequence
- ATGGAATCTACTGTAACTGGACGAAGGCGGACTGCCACAAGGCATTCTGCTGAAGATCAAGCTCTTGACCAAATAGCTAAAGAGGCAGAAGCTCGACTAGCTGCAAGGAGACAAGCAAGAGCTGAAGCTAGAGAAATTCGAATGCGTGAATTGGAAAGACAACAGAAAGAAGCAGAAGAAAATGCTGATAGAGTTTATGACATGTGTTCAGATCCTAATAGAGCCATGAGAGTAACTCCAGATCCTGTAAGGACATCACGCTTGCTGACTAATTCTAATAATTTTCAATCCAGCTGTAAATCATCAGAAGATTCATTAGAAGATGTAGGACTTGGTAGAGATCTTAGGTTAGAGCTGAAGGAATTTGAAGAGAAATTCAGAAAAGCAATGATAGCTAATGCCCAATTAGACAATGAAAAATCTTCTTTTGCCTATCAAGTTGATATATTAAAAGATAAATTGGAAGAATTAGAAGAAATGGCAGCTCAGTTACGTAGAGAACTACGAGAGAAGAATCGAGACGCTGAACAGTTAAAACGACTTGGTCAAAGATTAAAAGATGATTTAGATTTATGCAGAACACAATTGTTAGAAAGGGATACACTAATTCAGGAAAATGGACTAGTGATAGTTGAAGATGAAGGAACTGATGAAGAAAATGACGTTGAAAGTGGACCCTGCCATAGAAGAAGAGTATTAGTTAGTAAAGAGTCTGCAGATTTATTGCAGAATGCTGGAAAAGGATCTTTGGACGTTCGACTGAGAAAGTTCGCTTCGGAGAAAAAAGAATTAGAAGATCAAATACGACATTTAAGATTGGAATTAGAAGAAACCAAGAATCGCATAAGATCTGAGAGATCCCCGGGTGCAGTATTAGGTGGCTTAACGGATTCTGAAGATATTCAACGAGAAGCTAATAAGCTTTTAGCCGACTACAAATTCAAGCTGCAAAAAGCGGAACAAGACATGTCTACGTTACAAGCGACGGTAGCTAGATTAGAAAGTCAAGTAATACGCTATAAGTCTGCAGCAGAAGCATCTGAGAAAGCGGAAGATGAACTCAAAGTTGAAAAGAGAAAATTGCAAAGAGAAGTTAGAGAGTCTCAAGGACGCGTTGAAGAACTCGAAACAGCGAACTCGCATTTACAAAGGCGATTAGATAAACTTAAAAATGCTAAATCTGCTCTTTTTAAAGATCTTTGA
- Protein Sequence
- MESTVTGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSDPNRAMRVTPDPVRTSRLLTNSNNFQSSCKSSEDSLEDVGLGRDLRLELKEFEEKFRKAMIANAQLDNEKSSFAYQVDILKDKLEELEEMAAQLRRELREKNRDAEQLKRLGQRLKDDLDLCRTQLLERDTLIQENGLVIVEDEGTDEENDVESGPCHRRRVLVSKESADLLQNAGKGSLDVRLRKFASEKKELEDQIRHLRLELEETKNRIRSERSPGAVLGGLTDSEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALFKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01235024;
- 90% Identity
- iTF_01232398;
- 80% Identity
- iTF_01514822;