Pbar001222.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pogonomyrmex barbatus
Gene Symbol
bab2
Assembly
GCA_000187915.1
Location
NW:140943-148335[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-07 0.0003 19.7 0.1 1 39 283 321 283 335 0.92

Sequence Information

Coding Sequence
ATGGAATCTGGAAGTAATATATCTAACCCGTGCAATTATCCCGGAGGAGATCGCCAACAATTTTGCGTCTCTTGGAATTCTCATCAGTCGAATATGCACAGTGCATTTCCAAAATTGCTTAGCTCAGAGCAATTTGTCGATGTTACTCTGGCATGTGACGGAGGCTCGATAAAATGTCACAAAGTTGTATTATCCGCCTGTAGTGATTATTTGGAGCGCCTGCTATTGGAGATACCATGTACTCATCCTGTCATCTTTCTGAGAGACATGAAAATGTGGGAGCTTCAAGCACTGGTCGAGTTTATGTATCGTGGAGAGGTATATGTCGAGCAACAGCAACTCGCTACATTGATGCAAGCAGCAGAAGTTTTACAGGTCCGTGGCTTATCCACTCAGGGATGCGATAACTCAGTGAGTGAGATGAACACACAATCGTGTGATTCTAATGCACCTGTTACTCCGTCGACTCCTACTCATGGTGACAGTAACAATTACAATAAAGCAGAAACTTCATCTAACGATGGAAGCACCTCTGATTTCCTGTCATGTACGCCGATGACGAATACAGGAAACAATTCGTCCACCATCACTCCCGTCTCACAGAATCCTAACTCCTCCAACTTCGTAAATATGGAACATAGTGAAGCGCTACAACATTTAGAAAAAGCTTTAAGCGCTTGCGAGGCGACTCTTACCGAGACCACGGGTATGGTAAAAATGGAGCCCGATGAACAATTTTCTCAACAACAGGAGAAACCATATTCCATTAGTATGGTACCCAGTAGTAATTGTAATCCTAGCAGCCCATTTCCCGCAATCGAAGGTTATCAAAGACGACAAAGACGCTCGGAAGAGGAACTCAAGCAAGCTTCGGACATGGTGGCACGTGGCATGACATTTCAAGTAGCCTCGGAAAAGTACAAGATACCGATCAGCACAATTCGATTCTACATGGTCAGAAAGGGCATTCTACAGAGGCGAAAACGTGGACGCGGCTCCAGCAATCTCGGCATGAACAGTCAACCGGGTAGTCCGGCCAGTCCGCCGTATCATATGATGAATTATCGTTTACCGGAGAGCCTGAATTCCAGCCTACCGTAG
Protein Sequence
MESGSNISNPCNYPGGDRQQFCVSWNSHQSNMHSAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLEIPCTHPVIFLRDMKMWELQALVEFMYRGEVYVEQQQLATLMQAAEVLQVRGLSTQGCDNSVSEMNTQSCDSNAPVTPSTPTHGDSNNYNKAETSSNDGSTSDFLSCTPMTNTGNNSSTITPVSQNPNSSNFVNMEHSEALQHLEKALSACEATLTETTGMVKMEPDEQFSQQQEKPYSISMVPSSNCNPSSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYKIPISTIRFYMVRKGILQRRKRGRGSSNLGMNSQPGSPASPPYHMMNYRLPESLNSSLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01229135; iTF_01228471; iTF_00280065; iTF_00867557; iTF_00868042; iTF_01077389; iTF_00898896; iTF_00898673; iTF_01077588; iTF_00868982; iTF_00868220; iTF_00280673; iTF_00730179; iTF_00730891; iTF_00729452; iTF_01245336; iTF_00729980; iTF_00866113; iTF_00024710; iTF_00866799; iTF_00763329; iTF_00763157; iTF_00762652; iTF_00864743; iTF_00863369; iTF_00864076; iTF_00861997; iTF_00865430; iTF_00860503; iTF_00861276; iTF_00862679; iTF_01423777; iTF_01267682; iTF_01269174; iTF_01267486; iTF_01268959; iTF_01268395; iTF_01268196; iTF_01271340; iTF_01271138; iTF_01269724; iTF_01269911; iTF_01266974; iTF_01266810; iTF_01270430; iTF_01270632; iTF_01354725; iTF_00303208; iTF_01254921; iTF_01406666; iTF_01405896; iTF_01406420; iTF_01407512; iTF_00016610; iTF_00015303; iTF_00016780; iTF_00015481; iTF_01477026; iTF_01476105; iTF_01476364; iTF_01476850; iTF_00181412; iTF_01261925; iTF_00016135; iTF_01261768; iTF_00014833; iTF_00181233; iTF_00014648; iTF_00182714; iTF_00015967; iTF_01409319; iTF_00773928; iTF_00385677; iTF_00127598; iTF_00126099; iTF_00129112; iTF_00128350; iTF_00126847; iTF_00417486; iTF_00417708; iTF_01408400; iTF_00885273; iTF_00765775; iTF_00182074; iTF_00181896; iTF_01015963; iTF_01520156; iTF_01520398; iTF_01477728; iTF_01477496; iTF_00141163; iTF_00142558; iTF_00141311; iTF_00142400; iTF_00215810; iTF_00226018; iTF_00218531; iTF_00228779; iTF_00220685; iTF_00222628; iTF_00228074; iTF_00226700; iTF_00219218; iTF_00227378; iTF_00215128; iTF_00217849; iTF_00230619; iTF_00231420; iTF_00219901; iTF_00230784; iTF_00873892; iTF_01233572; iTF_01234446; iTF_01234271; iTF_01233760; iTF_00721386; iTF_01364784; iTF_00058836; iTF_00058074; iTF_00059578; iTF_00905534; iTF_00229453; iTF_00684877; iTF_00756558; iTF_00756779; iTF_01513582; iTF_01514081; iTF_01514920; iTF_01512112; iTF_01514257; iTF_01512756; iTF_01513397; iTF_01512280; iTF_01512927; iTF_01514751; iTF_00223983; iTF_01232335; iTF_01232492; iTF_00224656; iTF_00223298; iTF_00306384; iTF_00140690; iTF_00141926; iTF_00221842; iTF_00222005; iTF_00232534; iTF_00232700; iTF_00225341; iTF_00233331; iTF_00754547; iTF_00754888; iTF_00230133; iTF_01454293; iTF_01454292; iTF_00221367; iTF_00217176; iTF_01255801; iTF_01235131; iTF_01234951; iTF_01232926; iTF_01233104; iTF_00085516; iTF_00087304; iTF_00088944; iTF_00088152; iTF_00086425; iTF_00084670; iTF_01498316; iTF_01090094; iTF_01089922; iTF_01122990; iTF_01122549; iTF_01123157; iTF_00963781; iTF_00963939; iTF_00962607; iTF_00963291; iTF_00964575; iTF_00961926; iTF_00769551; iTF_00769796; iTF_00109938; iTF_01355540; iTF_01355238; iTF_00216501; iTF_01418446; iTF_01523287; iTF_01523495; iTF_01423032; iTF_01421662; iTF_01422336; iTF_00452506; iTF_00452677; iTF_00360316; iTF_00361007; iTF_01071105; iTF_01070955; iTF_01539709; iTF_00231910; iTF_00214321; iTF_00232084; iTF_00214491; iTF_00633740; iTF_01169275; iTF_00625600; iTF_00625420;
90% Identity
iTF_01422336;
80% Identity
iTF_01229135; iTF_01228471;