Veme010143.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- bab2
- Assembly
- GCA_000949405.1
- Location
- NW:756626-764680[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-07 0.00037 19.7 0.1 1 39 282 320 282 334 0.92
Sequence Information
- Coding Sequence
- ATGGAAACTGGAAATAACTTGCCCAGCCCGGGCACTTATCCCGGCGGGGATCGCCAGCAGTTCTGTGTCTCTTGGAACTCTCATCAGTCGAACATGCACAGTGCGTTTCCAAAGCTACTCAGCTCGGAGCAGTTTGTCGATGTGACTCTGGCCTGTGACGGAGGCTCGATAAAGTGTCACAAGGTTGTGTTGTCCGCCTGCAGTGACTACTTGGAGCGCCTACTGTTGGAGATACCGTGCACCCACCCCGTTATCTTCCTCAGAGACATGAAGATGTGGGAGCTTCAGGCCCTGGTCGAGTTCATGTATCGCGGCGAGGTGTACGTCGAACAGCAACAGCTGGCTACATTGATGCAAGCGGCGGAAGTTTTGCAGATTCGTGGCTTATCCACTCAGGGAAGCGATAACTCGGCGAGCGAGAGCAATACGCAATCGTGCGATTCTAACGCGCCTGTCACCCCGTCGACTCCTACTCACGGCGACAGCAACTTCAAGGTGGAAACCTCATCCAACGACGAGACCTCCTCTGACTTCCTCTCATGCCCGACAATGACTAACACGGGAAACAACTCTGCCGCCATCACACCACCTGCCTCGCACAATCCCAACTCCTCCAACTACGTCAACATGGAGCACAGCGAGGCGCTGCAGCATTTAGAAAAAGCCCTCAGCGCCTGCGAGGCGACCCTCACCGAAACCACGGGTATGGTGAAAATGGAGCCGGACGAGCAGTTTGTACAGCAGCAGGAAAAACCGTACTCCATTAGCATGGTGTCCAGTAATAATTGCAATCCCAGCAGCCCATTTCCCGCGATCGAAGGTTATCAAAGACGACAAAGGCGTTCGGAAGAGGAACTCAAGCAAGCTTCGGACATGGTGGCACGCGGCATGACGTTTCAAGTAGCCTCGGAAAAGTACAAGATACCGATCAGCACAATCCGCTTCTACATGGTCAGAAAGGGCATTTTACAGAGGCGAAAACGCGGCCGCGGCTCCAGCAATCTCGGTATGAACAGCCAGCCGAGCAGTCCGGCCAGTCCACCGTATCATATGATGAATTATCGTTTGCCGGAGAGCCTAAATTCCAGCCTACCGTAG
- Protein Sequence
- METGNNLPSPGTYPGGDRQQFCVSWNSHQSNMHSAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLEIPCTHPVIFLRDMKMWELQALVEFMYRGEVYVEQQQLATLMQAAEVLQIRGLSTQGSDNSASESNTQSCDSNAPVTPSTPTHGDSNFKVETSSNDETSSDFLSCPTMTNTGNNSAAITPPASHNPNSSNYVNMEHSEALQHLEKALSACEATLTETTGMVKMEPDEQFVQQQEKPYSISMVSSNNCNPSSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYKIPISTIRFYMVRKGILQRRKRGRGSSNLGMNSQPSSPASPPYHMMNYRLPESLNSSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228300;
- 90% Identity
- iTF_01422336;
- 80% Identity
- iTF_01520398;