Vman007515.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- bab1_3
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000013.1:5760925-5768027[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-08 3.3e-05 23.0 0.1 1 39 285 323 285 337 0.92
Sequence Information
- Coding Sequence
- ATGGAAAGTGGAAGTAATTTGCCTAGTCCAGGCAATTATCCAGGTGGGAATCGGCAACAATTTTGTGTATCATGGAATTCTCACCAGTCAAACATGCACAGTGCTTTTCCAAAGCTATTGAGCTCAGAACAATTCGTCGATGTTACTTTAGCTTGTGATGGTGGTTCTATCAAATGTCATAAAGTGGTATTATCTGCCTGTAGCGATTATTTAGAACGCTTATTGCTAGAAATACCATGTACTcatcctattatttttctgaGAGATATGAGAATGTGGGAACTTCAAGCATTGGTCGAATTTATGTACCGTGGTGAAGTATACGTAGAACAACAACAGCTTGCAAAATTGATGCAAGCTGCAGAAGTCCTGCAGgTTCGTGGCTTATCGACTCAGGGAAGTGATAGCTCTTCAATCGAGAGTAATTCACAACAATGTGATTCTAATCCACCTATCACTCCATCAACGCCAACTCAACATGATGTACCTCATTTCAAATCCGATGACACTCACTCTAACGATGAAGGCAGCTCAAGCTTTTTGGAGCCTACCTCAGTTGCTGGATCTAGTACAGGAAATGTTCCATCTCATAATAATACTCCAACTTCGCAAAATCCAAACTCATCCAATTTTATGGAACATAGTGAAGCATTACAACATTTGGAAAAGGCTCTTAGTGCTTGCGAAGCTACTCTAACAGAAACTCAGGGGATGGTTAAAATGGAACCAGATGAACAATTTTCTCAACAGCAAGATGTCAAGCCTTATTCTATCACTATGGTACGAAATAGTAACTGCAATCCCAGCAGTCCATTTCCTGCTATAGAAgGTTATCAAAGACGGCAAAGACGTTCAGAAGAGGAACTTAAACAAGCTTCAGATATGGTTGCACGTGGCATGACATTTCAGGTGGCatcagaaaaatataatatacctaTCAGTACGATTCGTTTCTATATGGTTAGGAAGGGAATTTTACAAAGGCGAAAGCGTGGACGTGGTTCCAGCAATCTTGGAGTAAACAGTCAACCTGAAAGTCCTGCAAGCCCACCATTTCATATGATAAACTACCGTTTGCCAGACAGCCTAAATTCCAGCCTACCGTAG
- Protein Sequence
- MESGSNLPSPGNYPGGNRQQFCVSWNSHQSNMHSAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLEIPCTHPIIFLRDMRMWELQALVEFMYRGEVYVEQQQLAKLMQAAEVLQVRGLSTQGSDSSSIESNSQQCDSNPPITPSTPTQHDVPHFKSDDTHSNDEGSSSFLEPTSVAGSSTGNVPSHNNTPTSQNPNSSNFMEHSEALQHLEKALSACEATLTETQGMVKMEPDEQFSQQQDVKPYSITMVRNSNCNPSSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYNIPISTIRFYMVRKGILQRRKRGRGSSNLGVNSQPESPASPPFHMINYRLPDSLNSSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228300;
- 90% Identity
- iTF_01232335;
- 80% Identity
- iTF_01512927;