Bbif002551.1
Basic Information
- Insect
- Bombus bifarius
- Gene Symbol
- bab1
- Assembly
- GCA_011952205.1
- Location
- NW:2335169-2338344[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-07 0.0003 19.7 0.1 1 39 288 326 288 340 0.92
Sequence Information
- Coding Sequence
- ATGGAAGGCGGTAGCAATTTACATAACCCGGGTAATTATCCCGGTGGGGACCGCCAACAATTTTGTGTTTCATGGAACTCTCATCAGTCAAATATGCACAGTGCATTTCCAAAACTTTTAAGTTCTGAACAATTTGTCGATGTCACTTTAGCCTGCGACGGAGGCTCTATAAAATGTCACAAAGTGGTACTGTCCGCTTGTAGTGATTATTTGGAACGTTTGCTATTAGAAATACCATGCACTCAtcctattatatttttgagaGATATGAGGATGTGGGAACTTCAAGCTTTAGTGGAGTTTATGTATCGTGGTGAAGTATATGTGGAGCAACAGCAGCTAGGTAAATTAATGCAAGCTGCTGAAGTTTTACAGGTTCGTGGTTTATCCACTCAAGGGAATGATAATTCTTCGAGTGAAGGTAGTTCTCAACAATGCGACTCTAATGCCGCTGTTGCACCATCTACGGCTGCACAGCAGGATGGATCTGATTATAAAGGCGAAGAAACTCCATCTGATGATGGAACTTCGAGTGCTACCTTTTTAGAGACTACGTCAATTGCTGCGACTAGTACAGCAAGCGCTCCATCACACAGTACTACACCAGTTCCGCAGAATCCGAATTCatcaaattttatgaatatggAACATAGCGAGGCGTTACAGCATTTGGAAAAAGCCCTTAGCGCTTGTGAAGCGACATTAACTGAAACACCAGGAATGGTTAAAATGGAGCCGGATGAACAGTTTACCCAACAGCATGAAGTCAAACCGTACTCTATTAGTATGGTACCAAGCAGTAATTGTAATCCTAGTAGTCCGTTTCCTGCGATCGAAGGTTATCAGAGACGACAAAGACGTTCGGAAGAAGAATTGAAGCAAGCTTCGGATATGGTAGCACGTGGTATGACATTTCAAGTTGCTTCGGAAAAGTACAAAATTCCGATAAGTACGATTCGATTCTATATGGTTAGAAAAGGTATATTGCAAAGGCGAAAACGCGGTCGTGGTTCAAGTAATCTTGGTATGAATAGTCAACCGGGAAGTCCTGCAAGCCCGCCATATCATATGATGAACTATCGTTTGCCAGAAAGCCTAAACTCCAGCCTACCGTAG
- Protein Sequence
- MEGGSNLHNPGNYPGGDRQQFCVSWNSHQSNMHSAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLEIPCTHPIIFLRDMRMWELQALVEFMYRGEVYVEQQQLGKLMQAAEVLQVRGLSTQGNDNSSSEGSSQQCDSNAAVAPSTAAQQDGSDYKGEETPSDDGTSSATFLETTSIAATSTASAPSHSTTPVPQNPNSSNFMNMEHSEALQHLEKALSACEATLTETPGMVKMEPDEQFTQQHEVKPYSISMVPSSNCNPSSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYKIPISTIRFYMVRKGILQRRKRGRGSSNLGMNSQPGSPASPPYHMMNYRLPESLNSSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228300;
- 90% Identity
- iTF_00966113;
- 80% Identity
- iTF_00231910;