Pfla017929.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- bab2
- Assembly
- GCA_014825475.1
- Location
- QVNW01001111.1:44260-45631[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-08 6.2e-05 23.0 0.1 1 39 286 324 286 338 0.92
Sequence Information
- Coding Sequence
- ATGGATACGAGCAACACCATTCCTAATGCAGGAAATTATCCAGGAGACCGACAACAGTTCTGTGTCTCTTGGAATTCCCACCAATCAAACATGCACAGTGCATTTCCAAAGTTGCTGAGTTCAGAGCAGTTTGTTGACGTTACTCTGGCGTGTGACGGAGGTTCAATAAAATGTCACAAAGTTGTACTGTCCGCCTGCAGTGACTATTTGGAACGTTTACTGCTGGATATACCATGCTCTCATCCTGTCATCTTTTTGAGAGACATGAAAATGTGGGAACTACAAGCTCTGGTCGAATTTATGTATCGTGGAGAAGTATATGTCGAGCAACAACAACTCGCTACATTGATGCAAGCGGCTGAGGTTTTGCAGATACGTGGCTTATCCACTCAGGGATGTGACAATTCAAGCGAGAACACTCAAGTCGACTCGAATCCACCTGTACCTCCATCAACTCCTACTCATGTCGGAGATGACGCCAGTATTTTCAAAACAGAAAATTCTTCCAACCATGACGAGAACACATCTGATTTTCTTCCCTGTTCTGCAATGGCTGCGACTAGCACAGGGAACAACTCTTCAACCACTATTACGCCCATCTCACAAAATCCAAACTCATCATCTAATTTCGGCATAGAGCAAAATGAGGCACTGCAACATCTCGAAAAGGCTCTCAGCGCTTGCGAAGCGACTCTTACCGAGACACAAGGTATGGTGAAGATGGAACCGGACGAACAGTTCTCGCAGCAGGACGTCAAGCCGTACTCAATCAGTATGGTACGAGGCAGCAGTAACTGCAGCAATCCCAGCAGCCCGTTTCCGGCGATTGAAGGATATCAAAGAAGACAAAGACGCTCGGAAGAAGAATTGAAACAAGCATCGGACATGGTCGCACGTGGAATGACATTTCAGGTAGCCTCGGAGAAATACAACATACCGATCAGCACTATTCGATTTTACATGGTTAGAAAGGGCATTCTGCAGAGGAGAAAACGCGGCCGCGGTTCGAGCAATCTCGGTATGAATAGCCAACCGAGCAGCCCTGGTAGTCCGCCGTATCATATGATGAGTTATCGCCTGCCTGAGAGCCTAAATTCCAGTCTACCGTAG
- Protein Sequence
- MDTSNTIPNAGNYPGDRQQFCVSWNSHQSNMHSAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLDIPCSHPVIFLRDMKMWELQALVEFMYRGEVYVEQQQLATLMQAAEVLQIRGLSTQGCDNSSENTQVDSNPPVPPSTPTHVGDDASIFKTENSSNHDENTSDFLPCSAMAATSTGNNSSTTITPISQNPNSSSNFGIEQNEALQHLEKALSACEATLTETQGMVKMEPDEQFSQQDVKPYSISMVRGSSNCSNPSSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYNIPISTIRFYMVRKGILQRRKRGRGSSNLGMNSQPSSPGSPPYHMMSYRLPESLNSSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228300;
- 90% Identity
- iTF_01269911; iTF_01267682; iTF_01269174; iTF_01267486; iTF_01268959; iTF_01268395; iTF_01268196; iTF_01271340; iTF_01271138; iTF_01266974; iTF_01266810; iTF_01270430; iTF_01270632;
- 80% Identity
- iTF_01269911;