Pcoc009148.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- bab2
- Assembly
- GCA_014839585.1
- Location
- QVOB01026940.1:39090-40474[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-08 6.3e-05 23.0 0.1 1 39 288 326 288 340 0.92
Sequence Information
- Coding Sequence
- ATGGATACGAGCAACACCATTCCTAATCCAGGAAATTATCCAGGAGACCGGCAACAGTTCTGTGTCTCTTGGAATTCCCACCAATCAAACATGCATAGTGCGTTTCCAAAGTTGCTGAGTTCAGAGCAGTTTGTTGACGTTACTCTGGCGTGTGACGGAGGTTCAATAAAATGTCACAAAGTTGTACTGTCCGCCTGCAGTGACTATTTGGAACGTTTACTGCTGGACATACCATGCTCTCATCCTGTCATCTTTTTGAGAGACATGAAAATGTGGGAACTACAAGCTCTGGTCGAATTTATGTATCGTGGAGAAGTATATGTCGAGCAACAACAACTCGCTACATTGATGCAAGCGGCAGAGGTTTTGCAGATACGTGGCTTATCCACTCAGGGATGTGACAACTCAAGCGAGAACACTCAAGTCGACTCGAATCCACCTGTACCTCCATCAACCCCTACTCATGTCGGAGATGACACCAGTATTTTCAAAACAGAAAATTCTTCCAACCATGACGAGAACACATCTGATTTTCTTCCCTGTTCTGCAATGGCTGCGACCAGCACAGGAAACAACTCTTCAACTACTATTACGCCTATCTCACAAAATCCAAACTCATCATCTAATTTCGGCAATATAGAGCAAAATGAGGCACTGCAACATCTCGAAAAGGCTCTCAGCGCTTGCGAAGCGACTCTTACCGAGACACAAGGTATGGTGAAGATGGAACCGGACGAACAGTTCTCGCAGCAGGACGTCAAGCCGTACTCCATTAGTATGGTGCGAAGCAGCAGTAACTGCAGCAATAATCCCAGCAGCCCGTTTCCGGCGATCGAAGGATATCAAAGAAGACAAAGACGCTCGGAAGAAGAATTGAAACAAGCATCGGACATGGTCGCACGTGGAATGACATTTCAGGTAGCCTCGGAGAAGTACAATATACCGATCAGCACTATTCGATTTTACATGGTTAGAAAGGGCATTCTGCAGAGGAGGAAACGCGGCCGCGGTTCGAGCAATCTCGGTATGAATAGCCAACCAAGCAGCCCTGGTAGTCCGCCGTATCATATGATGAGTTATCGCCTGCCTGAGAGCCTAAATTCCAGTCTACCGTAG
- Protein Sequence
- MDTSNTIPNPGNYPGDRQQFCVSWNSHQSNMHSAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLDIPCSHPVIFLRDMKMWELQALVEFMYRGEVYVEQQQLATLMQAAEVLQIRGLSTQGCDNSSENTQVDSNPPVPPSTPTHVGDDTSIFKTENSSNHDENTSDFLPCSAMAATSTGNNSSTTITPISQNPNSSSNFGNIEQNEALQHLEKALSACEATLTETQGMVKMEPDEQFSQQDVKPYSISMVRSSSNCSNNPSSPFPAIEGYQRRQRRSEEELKQASDMVARGMTFQVASEKYNIPISTIRFYMVRKGILQRRKRGRGSSNLGMNSQPSSPGSPPYHMMSYRLPESLNSSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228300;
- 90% Identity
- iTF_01269724;
- 80% Identity
- iTF_01266974;