Tsep003661.1
Basic Information
- Insect
- Trachymyrmex septentrionalis
- Gene Symbol
- bab2
- Assembly
- GCA_001594115.1
- Location
- NW:396217-403346[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-07 0.0003 19.7 0.1 1 39 287 325 287 339 0.92
Sequence Information
- Coding Sequence
- ATGGAATCTGGAAGTAACCTGCCCAATCCGGGCACTTATCCCGGAGGAGATCGTCAGCAGTTTTGTGTCTCTTGGAATTCTCATCAGTCGAACATGCACAGTGCGTTTCCAAAATTACTCAGCTCGGAACAGTTTGTCGATGTGACTCTGGCTTGTGACGGAGGTTCGATAAAGTGTCACAAGGTTGTATTATCCGCCTGTAGCGATTACTTGGAGCGTCTTCTGTTGGAGATCCCATGTACTCATCCTGTCATCTTTTTGAGAGACATGAAAATGTGGGAGCTTCAAGCCCTGGTTGAATTTATGTATCGTGGGGAGGTGTATGTGGAACAACAACAACTCGCTACTTTAATGCAAGCAGCGGAAGTTTTGCAGGTTCGTGGCTTATCCACTCAGGGATGCGATAACACGGTGAATGAGAGCAATACACAATCATGTGATTCTAATGCACCTGTCACTCCGTCGACTCCTACTCCCGGTGACAGCAACTTCAAGGTGGAGACTTCATCTAATGATGAAAGTACCTCTGACTTTATCTCATGTACGGCAATGGCTAGCACAGGAAACAACTCGTCCTCTATTACACCTCCTGTTTCACAAAATCCTAACTCCTCCAACTTCGTAAACATGGAACATAGCGAAGCATTACAACATTTAGAAAAAGCTCTTAGCGCTTGCGAAGCGACTCTTACCGAAACTACAGGAATGGTAAAAATGGAGCCGGATGAGCAGTTTGTACAACAGCAGGATGTCAAACCGTATTCCATTAGTATGGTATCCAGTAATAATTGCAATCCTAGCAGCCCATTCCCTGCGATTGAAGGTGAGCTTACagGTTATCAAAGACGACAAAGGCGTTCGGAAGAGGAACTCAAGCAAGCTTCGGACATGGTGGCACGCGGCATGACGTTTCAAGTAGCTTCAGAAAAGTACAAGATACCGATCAGCACAATTCGCTTTTACATGGTCAGAAAGGGCATTCTGCAGAGGCGAAAACGCGGCCGCGGATCCAGCAATCTTGGTATGAATAGCCAACCGAGTAGTCCGGCCAGTCCACCGTATCATATGATGAATTACCGTTTGCCAGAGAGCCTAAATTCCAGCCTACCGTAG
- Protein Sequence
- MESGSNLPNPGTYPGGDRQQFCVSWNSHQSNMHSAFPKLLSSEQFVDVTLACDGGSIKCHKVVLSACSDYLERLLLEIPCTHPVIFLRDMKMWELQALVEFMYRGEVYVEQQQLATLMQAAEVLQVRGLSTQGCDNTVNESNTQSCDSNAPVTPSTPTPGDSNFKVETSSNDESTSDFISCTAMASTGNNSSSITPPVSQNPNSSNFVNMEHSEALQHLEKALSACEATLTETTGMVKMEPDEQFVQQQDVKPYSISMVSSNNCNPSSPFPAIEGELTGYQRRQRRSEEELKQASDMVARGMTFQVASEKYKIPISTIRFYMVRKGILQRRKRGRGSSNLGMNSQPSSPASPPYHMMNYRLPESLNSSLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01228300;
- 90% Identity
- iTF_01422336;
- 80% Identity
- iTF_01477026;