Pruf019454.1
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- -
- Assembly
- GCA_963966595.1
- Location
- OZ016505.1:13833197-13842463[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-11 9.5e-08 32.0 0.0 1 38 552 590 552 595 0.89 2 4 1.1e-13 3e-10 40.0 0.1 2 39 607 644 606 647 0.94 3 4 1.3e-17 3.5e-14 52.6 0.0 1 45 661 706 661 706 0.98 4 4 2.4e-20 6.3e-17 61.4 0.0 1 45 713 758 713 758 0.97
Sequence Information
- Coding Sequence
- ATGGCACGTAAAAGTAAGgGCCTGCTCCGTACTGCtgagcaattaaaaattaaaggtcTTTGTGAAACCGCCGAAAGTACGGACGATATTGCAGACGCCGCTACCGCAACAATCACGGTGTCGGAAAATATACAACAGACCGTCATTGGCAATATTGTCAATGCTACGGTAGCCCAAAGCCAATCGTCTCCTACAACAGTGCTccatcatcagcaacagcagcagcagcagcagcaccaagcCGCTGCAAATGCCGCCGCTCTGACCCACACACTTGCGAATGTAAATAACACGAACAATACGCAGCAGATTGTAACGGCTGGTGGAACAATTGCAAATGTTATTGCGGCTACAGCTGTTAcgaatcaacaacaacaacaacaacaacttgtACGCAAATCACGTATTCGCAAACGTTCCAAATCGCCTGACCtacagcatcatcatcaacaacaacagcagcagcaacaacaacaacagcagcagcagcaccagcaccaACATCATCAGCAAACACACGCTCCTCAAGCGATTcttattcaaaatcaaaatcaaactGCCATCGTGAGTCTGCAGCAGACATCAAGCGGCAATTATATACCGCTAACTGGCACCGGACAGGCACTGACAACTACatctgctgccgctgctgctgctgctgccgccgctcatcaacagcaacaacatcagcaagcTCGTTTAGACGATTCAGATACGGAAAAACCATCTTTACAAAAGATATGCAAAACTGAAGCATCGGCGGCATCGTCACCGAATTCGTCAGGATCATCTTCGAACAATGCTGGTAATGTAACAACAGTTGGACCACCCGGTACAGCAATTGTTACACAAATTGTTGTAGCACGCGACGGCAAGGACAAGAATATGACAAGTTTAGGAATGGGCATGAATGGAGGTTTACTTGGCGTACCGATGGGATTTTTAGATTTTGCTCCTGAACCACCAGCACCATCAGCAACACCTGTTACCGTCACTGAACACGTCGATCTTTCCTGCAATCCTAGTACTGATACCCGAGATTTATCAAATCCCACCGAACCACTAGATATCGACAATCATCTTGCACAGCATATGATTCAAAGACTTGATCAATCACCAATGCATACCATACATCATCAAACCGGCGAAGAGAGCAGTTCAAATTTGGTGCAGCACATTAAAAGCGAAGTTGTTGAGgttaaacaacaacagcaacagcagcaacaacatcatcaggCACATCAACTGCATACCCAACAACAAATCTCACAGGGTCAATCAccacatcagcaacaacaacagcaacaacaccagcaacaattgcatcaacaacatcaacagcagcaaccacaacaacaacagcaacagcaccagcagcagcaacaacaacacgctCATCAAGAGATCTCTGGTGCGACAGTTATGGAAATAGATCCGAgtcaaataaagcatgaaccGGGCATGATAATAACTCCGGAGATAGTGAACATGATGACTACTGGACATATGGATATGTATAACTCAGATACCAGCGAGGATTCAATGATGATAGCCAACGGTTCACCCAACGACAATAATGAGCCTCATTATACCAATTTGGACCAACAACATGGTGGCGATAACAAAGGTCAGTTTAATGGTCCCAAAACTTGGACTCAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAATATGAGTTTGACGAAAGCATCTGTAACGTATGGCATCCCATCGACTACGCTCTGGCAGCGTGCCCATCGTATGGGCATTGAAACGCCAAAAAAGGAAGGCGGTACAAAATCATGGAATGAAGACTCATTAAACAGTGCATTAGAAGCATTACGTACGGGACAGATTTCCGCAAATAAAGCATCCAAAGCTTATGGGATACCGTCATCGACGCTTTATAAAATTGCGCGTCGCGAGGGTATTCGTTTGGCGGCACCATTTAATGCAGCGCCAACAACATGGACACCAGAGGACTTAGAACGTGCACTTGAGGCAATACGAGCTGGTCATACGTCCGTCCAGAAAGCGAGTGCCGAATTTGGCATACCAACAGGAACACTTTATGGTCGTTGTAAACGTGAAGGTATCGAGCTATCTCGATCGAATCCGACGCCCTGGTCAGAGGATGCCATGAACGAAGCCTTGAATTCTGTACGTGTTGGCCAAATGTCAATCAATCAAGCGGCTATACATTATAATTTACCCTACAGTTCATTGTACGGACGATTTAAACGGGGCAAGTATGACGTAAGCAATACTAGCGGCACCTCAATTAACAATACGTCTGGCAATACTTCGGGAagcattgaaattattgagcACAGTCAAGAGAATTCtcTGCACATGTTCCAACAGCAATTTCAGTATAGTCCATCacctcatcaacaacaacaatcacaacaatcacaacagcaacatcagccGCAAGGAACGCAACACATACAACATGTGGTGCatattcaacaacaacagcacacCCCAactcaacagcagcagcaacaacaacaacatcatcagcaacaacatatCCAACATCAGCAGGATGTTGTCACATCTAGCAGTCAAGTGCAACAGCAACATGCTACGCCGACGGGTCAGCAAATTCAACAGATCTACCATCATCACAATACACCTGAAAGAAGTTGA
- Protein Sequence
- MARKSKGLLRTAEQLKIKGLCETAESTDDIADAATATITVSENIQQTVIGNIVNATVAQSQSSPTTVLHHQQQQQQQQHQAAANAAALTHTLANVNNTNNTQQIVTAGGTIANVIAATAVTNQQQQQQQLVRKSRIRKRSKSPDLQHHHQQQQQQQQQQQQQQHQHQHHQQTHAPQAILIQNQNQTAIVSLQQTSSGNYIPLTGTGQALTTTSAAAAAAAAAAHQQQQHQQARLDDSDTEKPSLQKICKTEASAASSPNSSGSSSNNAGNVTTVGPPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGEESSSNLVQHIKSEVVEVKQQQQQQQQHHQAHQLHTQQQISQGQSPHQQQQQQQHQQQLHQQHQQQQPQQQQQQHQQQQQQHAHQEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDNNEPHYTNLDQQHGGDNKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSNTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQQSQQSQQQHQPQGTQHIQHVVHIQQQQHTPTQQQQQQQQHHQQQHIQHQQDVVTSSSQVQQQHATPTGQQIQQIYHHHNTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00257732; iTF_01486090; iTF_00972107; iTF_01181070; iTF_01414880; iTF_01022930; iTF_00366425; iTF_01426578;
- 90% Identity
- iTF_00366425;
- 80% Identity
- -